##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043313_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2383238 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.312355291414455 33.0 31.0 34.0 31.0 34.0 2 32.59450378015121 34.0 31.0 34.0 31.0 34.0 3 32.68756582431129 34.0 31.0 34.0 31.0 34.0 4 36.1863447964492 37.0 37.0 37.0 35.0 37.0 5 36.163425138404136 37.0 37.0 37.0 35.0 37.0 6 36.33280813750032 37.0 37.0 37.0 35.0 37.0 7 36.28021834160079 37.0 37.0 37.0 35.0 37.0 8 36.183181872729456 37.0 37.0 37.0 35.0 37.0 9 37.793701258539855 39.0 38.0 39.0 35.0 39.0 10 37.535930108533016 39.0 37.0 39.0 35.0 39.0 11 37.02572130857262 39.0 35.0 39.0 34.0 39.0 12 36.98997666200354 39.0 35.0 39.0 34.0 39.0 13 36.949260208170564 39.0 35.0 39.0 33.0 39.0 14 38.14501489150475 40.0 35.0 41.0 34.0 41.0 15 38.215811849257186 40.0 35.0 41.0 34.0 41.0 16 38.074520043738815 40.0 35.0 41.0 33.0 41.0 17 37.97766190367894 40.0 36.0 41.0 33.0 41.0 18 37.89286970080202 39.0 36.0 41.0 34.0 41.0 19 37.73248034816498 39.0 35.0 41.0 34.0 41.0 20 37.4998426510487 39.0 35.0 41.0 34.0 41.0 21 37.446429605435966 39.0 35.0 41.0 34.0 41.0 22 37.42236402742823 39.0 35.0 41.0 34.0 41.0 23 37.40881271614501 39.0 35.0 41.0 34.0 41.0 24 37.33568657431612 39.0 35.0 41.0 34.0 41.0 25 37.28962906768019 39.0 35.0 41.0 34.0 41.0 26 37.261356188513275 39.0 35.0 41.0 34.0 41.0 27 37.228053597668385 39.0 35.0 41.0 34.0 41.0 28 37.13656210584087 38.0 35.0 41.0 33.0 41.0 29 37.05370592446076 38.0 35.0 41.0 33.0 41.0 30 36.927608572874384 38.0 35.0 41.0 33.0 41.0 31 36.8004815297507 38.0 35.0 41.0 33.0 41.0 32 36.60894253951976 38.0 35.0 41.0 32.0 41.0 33 36.14963801349257 38.0 35.0 41.0 31.0 41.0 34 35.9028477223005 38.0 35.0 41.0 30.0 41.0 35 35.807452298091924 38.0 35.0 41.0 30.0 41.0 36 35.76082539805089 38.0 35.0 41.0 30.0 41.0 37 35.65910580479163 38.0 35.0 40.0 30.0 41.0 38 35.63245089244129 37.0 35.0 40.0 30.0 41.0 39 35.607902358052364 37.0 35.0 40.0 30.0 41.0 40 35.56540555328507 37.0 35.0 40.0 30.0 41.0 41 35.488087635393526 37.0 35.0 40.0 30.0 41.0 42 35.366226537173375 37.0 35.0 40.0 29.0 41.0 43 35.214459907067614 36.0 35.0 40.0 29.0 41.0 44 35.08724139175357 36.0 35.0 40.0 28.0 41.0 45 35.00666823875752 36.0 35.0 40.0 27.0 41.0 46 34.92590920420034 36.0 35.0 40.0 27.0 41.0 47 34.820073362375055 35.0 35.0 40.0 27.0 41.0 48 34.77196360581696 35.0 35.0 40.0 27.0 41.0 49 34.70069795798825 35.0 34.0 40.0 27.0 41.0 50 34.63287384642239 35.0 34.0 40.0 27.0 41.0 51 34.247431435718966 35.0 34.0 39.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 3.0 11 2.0 12 2.0 13 5.0 14 22.0 15 40.0 16 109.0 17 217.0 18 523.0 19 1017.0 20 1689.0 21 2802.0 22 4358.0 23 6475.0 24 10237.0 25 17553.0 26 27724.0 27 36603.0 28 41293.0 29 44600.0 30 48756.0 31 55528.0 32 64188.0 33 83467.0 34 211783.0 35 288156.0 36 204993.0 37 208989.0 38 327750.0 39 694162.0 40 191.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.26237329213448 17.50030840394455 24.477622461541817 28.759695842379152 2 34.022283968281805 19.938797551902077 24.98323709172143 21.055681388094687 3 25.81827748634421 21.41670282195903 33.07537895921431 19.689640732482445 4 23.373368501173612 23.525892084634435 31.0437312597399 22.057008154452053 5 21.944472184481782 30.98951930105176 28.214471236192107 18.851537278274346 6 78.99018058624443 1.9368187314905183 16.110560506336338 2.9624401759287156 7 78.96861328998614 1.7253837006627117 14.721022407329858 4.584980602021284 8 70.0654319879089 2.8531770641455028 20.044913684659274 7.0364772632863355 9 46.489943513824464 13.01963966670555 23.694947797911915 16.795469021558066 10 34.47112709683213 13.606152637713901 32.551763609005896 19.370956656448076 11 31.220801279603634 11.163635356603075 36.46198994812939 21.1535734156639 12 23.97301486465053 12.780846898211593 39.35888904087632 23.887249196261557 13 17.320091405054804 15.254498291819784 44.371187434909984 23.054222868215426 14 20.040088316819386 14.976850822284641 43.9272116339199 21.055849226976072 15 25.889273333171086 12.9389091647582 40.98734578753779 20.18447171453292 16 23.13772271170567 16.756656280237223 38.799440089491696 21.306180918565413 17 23.264818704636298 18.401603196995012 38.656819000032726 19.67675909833596 18 23.251811191328773 26.066259433594123 33.36376811715825 17.31816125791885 19 24.424837133345473 23.198648225649308 30.838380388362385 21.53813425264283 20 23.209096196015672 27.370115783652327 31.5862284841044 17.834559536227605 21 19.335962249678797 21.444815834591427 35.74091215396867 23.4783097617611 22 23.083510753017535 20.57335440270758 33.09233068623445 23.25080415804045 23 25.60667461663502 18.33941889144097 33.94251853990243 22.111387952021577 24 25.394190592798537 16.540311962128833 31.663476329262963 26.402021115809664 25 17.675574155833367 17.37191165968317 36.84617314762521 28.106341036858257 26 16.775957751596778 17.0785712547383 37.00385777668869 29.141613216976232 27 20.501183683710984 21.67215359943069 34.107881797789396 23.71878091906893 28 24.121174637195278 22.72454534545018 30.017690218098238 23.136589799256306 29 23.48380648512654 18.39123914606934 33.16542451907867 24.959529849725456 30 27.366926844905965 17.074543121585002 32.05655498947231 23.501975044036726 31 29.377217046723825 17.87236524426012 27.892724100572412 24.857693608443636 32 26.74281796446683 16.36768967262187 29.193181713282517 27.69631064962878 33 20.099335441949144 18.87285281621055 34.81414781066767 26.213663931172633 34 17.51444882970144 23.788266215963326 32.362483310521235 26.334801643814004 35 19.178907016420517 26.99369513242068 28.8577976685501 24.969600182608705 36 21.851699242794886 22.861963429586137 25.665166466798535 29.621170860820445 37 20.44478981956481 24.848126792204557 28.377946306663453 26.32913708156718 38 20.150316502170575 20.50953366806001 28.35919031166841 30.980959518101002 39 21.47024342512162 16.46952591390369 32.40423323226636 29.655997428708336 40 16.752334429041497 18.110654496109916 34.20052886031525 30.936482214533335 41 18.332537497304088 21.18210602549976 29.80503835538037 30.68031812181578 42 18.16717423941713 16.057271661495832 32.5917931822168 33.18376091687024 43 20.684170024143622 17.255725194042725 32.492810201918566 29.56729457989508 44 21.39899581997266 18.623276399587454 32.28275984186221 27.69496793857768 45 21.74730345857191 20.65530173654499 32.14194302037816 25.455451784504945 46 20.65765148088441 19.438847483969287 31.74051437581979 28.16298665932651 47 18.649543184524582 18.461437758209627 35.004267303559274 27.88475175370651 48 21.25033253078375 16.850604094093832 32.08999688658875 29.80906648853367 49 20.43941897536041 15.844451959896578 35.016435622459866 28.69969344228315 50 18.800346419451184 15.596889609850129 37.34545186003244 28.257312110666245 51 17.181918045952607 14.66122980583559 36.33078190260478 31.826070245607024 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 667.0 1 4080.0 2 7493.0 3 75256.0 4 143019.0 5 81411.5 6 19804.0 7 16714.5 8 13625.0 9 13019.5 10 12414.0 11 11982.5 12 11551.0 13 10959.0 14 10367.0 15 9474.5 16 8582.0 17 8026.5 18 7471.0 19 6889.5 20 6308.0 21 5939.0 22 5570.0 23 5519.5 24 5469.0 25 5326.5 26 6459.5 27 7735.0 28 7738.5 29 7742.0 30 9034.0 31 10326.0 32 12107.5 33 13889.0 34 15532.5 35 17176.0 36 18516.0 37 19856.0 38 22924.5 39 25993.0 40 30440.5 41 34888.0 42 41307.5 43 47727.0 44 54778.0 45 61829.0 46 71816.0 47 81803.0 48 115723.0 49 149643.0 50 190376.5 51 231110.0 52 246513.5 53 261917.0 54 242423.5 55 222930.0 56 200516.5 57 178103.0 58 163454.0 59 148805.0 60 147673.5 61 146542.0 62 142606.0 63 138670.0 64 130116.0 65 121562.0 66 98129.0 67 74696.0 68 57609.0 69 40522.0 70 33854.5 71 27187.0 72 25275.5 73 23364.0 74 19111.0 75 11368.0 76 7878.0 77 6314.0 78 4750.0 79 3400.0 80 2050.0 81 1549.0 82 1048.0 83 867.5 84 687.0 85 484.5 86 282.0 87 186.0 88 90.0 89 56.5 90 23.0 91 23.0 92 23.0 93 14.5 94 6.0 95 4.5 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2383238.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.84509007509563 #Duplication Level Percentage of deduplicated Percentage of total 1 72.56525436681352 20.20586044166149 2 10.67089011689803 5.942637929729468 3 4.018147241363153 3.3565701561226207 4 2.0455339675566337 2.2783231031312887 5 1.2789105735653 1.7805690059458996 6 0.9409972209235137 1.5721291426217945 7 0.7152548823575198 1.3941435638127946 8 0.622013918732477 1.385602687605523 9 0.5560494845614686 1.3934923185442134 >10 6.017773850109585 35.28151608664372 >50 0.3784725637958438 7.023775347902049 >100 0.17686380719136963 8.498478917670521 >500 0.007755366073721022 1.4623972579832156 >1k 0.005170244049147348 2.688817450247334 >5k 6.082640057820409E-4 1.0768226733002622 >10k+ 3.0413200289102047E-4 4.658863917077895 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 97942 4.109618930211754 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 12085 0.5070832203917527 No Hit CCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCTGC 7836 0.3287963686379623 TruSeq Adapter, Index 16 (100% over 23bp) CTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCTGCT 6685 0.28050073051873126 TruSeq Adapter, Index 16 (96% over 25bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 5882 0.246807075080206 No Hit GCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCTGC 5028 0.21097347390399113 TruSeq Adapter, Index 16 (100% over 23bp) CGCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCTG 4105 0.17224465202384318 TruSeq Adapter, Index 16 (95% over 23bp) GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3734 0.1566775957751597 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3711 0.15571252220718199 No Hit GGGCCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTC 3033 0.12726383181201373 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCC 2955 0.12399097362495899 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 2510 0.10531889807060815 No Hit CGTTCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTC 2404 0.10087116771384141 TruSeq Adapter, Index 16 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.29162005641064803 0.0 2 0.0 0.0 0.0 1.0001518941876557 0.0 3 0.0 0.0 0.0 1.632484879814773 0.0 4 0.0 0.0 0.0 2.080740572280234 0.0 5 0.0 0.0 0.0 4.378622697355446 0.0 6 0.0 0.0 0.0 5.326576699431613 0.0 7 0.0 0.0 0.0 7.89879147613457 0.0 8 0.0 0.0 0.0 11.13342435795334 0.0 9 0.0 0.0 0.0 14.21897435337973 0.0 10 0.0 0.0 0.0 15.986359734109644 0.0 11 0.0 0.0 0.0 17.292943465990387 0.0 12 0.0 0.0 0.0 18.1488798013459 0.0 13 0.0 0.0 0.0 18.650214540050133 0.0 14 0.0 0.0 0.0 18.974101621407513 0.0 15 0.0 0.0 0.0 19.659052096349587 0.0 16 0.0 0.0 0.0 20.3862140499606 0.0 17 0.0 0.0 0.0 21.310586689201834 0.0 18 0.0 0.0 0.0 21.90532376539817 0.0 19 0.0 0.0 0.0 22.571560205065545 0.0 20 0.0 0.0 0.0 23.301155822456675 0.0 21 0.0 0.0 0.0 24.011366049047556 0.0 22 4.195972034685583E-5 0.0 0.0 24.64642641649722 0.0 23 8.391944069371166E-5 0.0 0.0 25.252744375509288 0.0 24 1.2587916104056748E-4 0.0 0.0 25.767883862207636 0.0 25 1.2587916104056748E-4 0.0 0.0 26.25772163753683 0.0 26 1.2587916104056748E-4 0.0 0.0 26.73002024976104 0.0 27 1.2587916104056748E-4 0.0 0.0 27.232571820355332 0.0 28 1.6783888138742332E-4 0.0 0.0 27.70579354642717 0.0 29 1.6783888138742332E-4 0.0 0.0 28.213002645979966 0.0 30 1.6783888138742332E-4 0.0 0.0 28.687315324780823 0.0 31 1.6783888138742332E-4 0.0 0.0 29.196286732588185 0.0 32 1.6783888138742332E-4 0.0 0.0 29.774156001205082 0.0 33 1.6783888138742332E-4 0.0 0.0 30.312583132695938 0.0 34 1.6783888138742332E-4 0.0 0.0 30.884200402981154 0.0 35 1.6783888138742332E-4 0.0 0.0 31.38310147790527 0.0 36 1.6783888138742332E-4 0.0 0.0 31.91368214169126 0.0 37 1.6783888138742332E-4 0.0 0.0 32.69555957063457 0.0 38 1.6783888138742332E-4 0.0 0.0 33.533243427639206 0.0 39 2.0979860173427916E-4 0.0 0.0 34.44796533120066 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATACGG 85 0.0 45.0 1 CGTTTTT 24280 0.0 44.46252 1 CATGCGG 295 0.0 43.474575 1 CACTTAC 3545 0.0 41.00141 36 TAGTAGG 610 0.0 40.942623 1 GCACTTA 3540 0.0 40.9322 35 CGCACTT 3550 0.0 40.816902 34 ACTACGG 155 0.0 40.64516 1 CTTGCGG 650 0.0 40.5 1 AATTCGG 50 1.0822987E-9 40.5 1 GTTTTTT 27375 0.0 40.421917 2 TAACGGG 610 0.0 40.204918 2 CTAACGG 320 0.0 40.07813 1 TTATCGG 45 1.9297659E-8 40.000004 1 ACGTAGG 180 0.0 40.000004 1 TTCACGG 225 0.0 40.0 1 AGGGCTT 1070 0.0 39.95327 5 GGACTAA 485 0.0 39.896904 7 CCGCACT 3645 0.0 39.753086 33 ACTTACT 3595 0.0 39.742695 37 >>END_MODULE