##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043312_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 612680 Sequences flagged as poor quality 0 Sequence length 52 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.182431285499774 33.0 31.0 34.0 30.0 34.0 2 32.51519879872038 34.0 31.0 34.0 31.0 34.0 3 32.55928380231116 34.0 31.0 34.0 31.0 34.0 4 36.105818698178496 37.0 35.0 37.0 35.0 37.0 5 35.985114578572826 37.0 35.0 37.0 35.0 37.0 6 36.26027453156623 37.0 36.0 37.0 35.0 37.0 7 36.17643631259385 37.0 37.0 37.0 35.0 37.0 8 36.14978944963113 37.0 37.0 37.0 35.0 37.0 9 37.721784618397855 39.0 38.0 39.0 35.0 39.0 10 37.572083306130445 39.0 37.0 39.0 35.0 39.0 11 37.24576287784814 39.0 37.0 39.0 34.0 39.0 12 37.2198015277143 39.0 37.0 39.0 34.0 39.0 13 37.22603153359013 39.0 37.0 39.0 34.0 39.0 14 38.62887804400339 40.0 38.0 41.0 34.0 41.0 15 38.73639746686688 40.0 38.0 41.0 35.0 41.0 16 38.75589377815499 40.0 38.0 41.0 35.0 41.0 17 38.732494940262455 40.0 38.0 41.0 35.0 41.0 18 38.429770842854346 40.0 38.0 41.0 35.0 41.0 19 38.13016093229745 40.0 37.0 41.0 34.0 41.0 20 37.78410915975713 39.0 35.0 41.0 34.0 41.0 21 37.721998433113534 39.0 35.0 41.0 34.0 41.0 22 37.67649833518313 39.0 35.0 41.0 34.0 41.0 23 37.68115655807273 39.0 35.0 41.0 34.0 41.0 24 37.55370176927597 39.0 35.0 41.0 34.0 41.0 25 37.47860383887184 39.0 35.0 41.0 34.0 41.0 26 37.43258307762617 39.0 35.0 41.0 34.0 41.0 27 37.43226480381276 39.0 35.0 41.0 34.0 41.0 28 37.388127570673106 39.0 35.0 41.0 33.0 41.0 29 37.310183129855716 39.0 35.0 41.0 33.0 41.0 30 37.25434158124959 39.0 35.0 41.0 33.0 41.0 31 37.02771267219429 39.0 35.0 41.0 33.0 41.0 32 36.88187961088986 39.0 35.0 41.0 33.0 41.0 33 36.66448553894366 39.0 35.0 41.0 32.0 41.0 34 36.39859469870079 39.0 35.0 41.0 31.0 41.0 35 36.25764510021545 39.0 35.0 41.0 31.0 41.0 36 36.25880231115754 39.0 35.0 41.0 31.0 41.0 37 36.246929881830646 39.0 35.0 41.0 31.0 41.0 38 36.190938173271526 39.0 35.0 41.0 31.0 41.0 39 36.175933603186 39.0 35.0 41.0 30.0 41.0 40 36.166702030423714 39.0 35.0 41.0 31.0 41.0 41 36.136324019063785 39.0 35.0 41.0 31.0 41.0 42 36.01829503166417 39.0 35.0 41.0 30.0 41.0 43 35.84746523470653 38.0 35.0 41.0 29.0 41.0 44 35.7066739570412 38.0 35.0 40.0 29.0 41.0 45 35.64059868120389 38.0 35.0 40.0 28.0 41.0 46 35.6174658875759 38.0 35.0 41.0 28.0 41.0 47 35.49582326826402 38.0 35.0 40.0 28.0 41.0 48 35.443561075928706 38.0 35.0 40.0 28.0 41.0 49 35.36528693608409 38.0 35.0 40.0 28.0 41.0 50 35.17874583795783 37.0 35.0 40.0 27.0 41.0 51 35.06811549258993 37.0 35.0 40.0 27.0 41.0 52 34.6727492328785 36.0 35.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 0.0 14 3.0 15 14.0 16 15.0 17 49.0 18 101.0 19 233.0 20 422.0 21 748.0 22 1216.0 23 1959.0 24 3545.0 25 6198.0 26 8453.0 27 8978.0 28 8631.0 29 8647.0 30 9692.0 31 11656.0 32 14377.0 33 18979.0 34 32836.0 35 63990.0 36 70482.0 37 47303.0 38 77594.0 39 216242.0 40 316.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 22.837370242214533 19.373571848273162 25.762877848142583 32.02618006136972 2 35.20614350068551 19.957237056864923 25.33002546190507 19.506593980544494 3 20.588072076777436 21.123098517986552 39.952503753998826 18.336325651237185 4 22.642488738003525 23.479467258601556 36.39485538943658 17.483188613958347 5 19.38809819155187 28.343017562185807 33.16641640007835 19.10246784618398 6 69.96180714239081 1.5732519422863485 24.12499183913299 4.339949076189854 7 69.75370503362277 1.2992100280733825 20.335738068812432 8.611346869491415 8 56.68897303649539 2.8220278122347717 29.801364496964155 10.687634654305674 9 32.04756153293726 17.300711627603317 31.628256185937193 19.02347065352223 10 25.40853300254619 17.167689495331985 45.406900829144085 12.016876672977737 11 22.38297316706927 14.326075602271985 41.98325390089443 21.307697329764313 12 16.147907553698502 19.179832865443625 45.88202650649605 18.79023307436182 13 11.067931056995494 22.834269112750537 45.129104916106286 20.96869491414768 14 9.2927792648691 21.855454723509826 49.04730038519292 19.804465626428154 15 10.21152967291245 17.600541881569498 51.63347914082392 20.55444930469413 16 10.631487889273357 24.040282039563884 42.25794868446824 23.07028138669452 17 12.531664164000784 21.851700724684992 43.99768231376902 21.61895279754521 18 14.203825814454527 29.244303714826664 40.85101521185611 15.7008552588627 19 14.293105699549521 23.80459620030032 37.33906770255272 24.56323039759744 20 11.481197362407784 31.29937324541359 35.85150486387674 21.367924528301888 21 12.430632630410656 24.201377554351374 36.98994581184305 26.37804400339492 22 10.401677874257361 27.726219233531367 33.3717438140628 28.500359078148463 23 10.173336815303259 23.554220800417834 44.112097669256386 22.16034471502252 24 15.538454005353527 21.217764575308482 40.79535809884442 22.448423320493568 25 11.62466540445257 24.54103283932885 40.42975125677352 23.40455049944506 26 14.798753019520793 21.22478292093752 37.41986028595678 26.556603773584907 27 21.53016256447085 21.251876999412417 39.349742116602464 17.868218319514266 28 15.83061304432983 21.350297055559185 35.22523992949011 27.593849970620877 29 17.5654501534243 20.66968074688255 32.660605862766865 29.104263236926293 30 26.199647450545143 18.624730691388653 29.114872364039957 26.060749494026247 31 20.258373049552787 17.38411568845074 33.410426323692626 28.947084938303846 32 19.05448194816217 18.76052751844356 29.269275967878826 32.915714565515444 33 22.569040934908923 16.46340667232487 35.58186981784945 25.385682574916757 34 17.283900241561664 14.998204609257687 36.773356401384085 30.944538747796567 35 21.140073121368413 20.0510870274858 33.884899131683746 24.923940719462035 36 20.828817653587517 17.096363517660116 34.97959783247372 27.095220996278645 37 19.159593915257556 22.03466736306065 35.380133185349614 23.42560553633218 38 14.936508454658224 22.636286479075537 35.15244499575635 27.274760070509892 39 20.31957955213162 20.25527192008879 38.76819873343344 20.65694979434615 40 14.909577593523535 16.126362864790757 43.1704968335836 25.793562708102108 41 18.98021805836652 20.383723966834236 34.24054971600183 26.395508258797413 42 20.177090814128093 15.96200300319906 40.0128941698766 23.84801201279624 43 22.964516550238297 19.02232813214076 37.37122151857413 20.64193379904681 44 16.07266435986159 21.484135274531564 37.05066266240125 25.392537703205587 45 20.412776653391656 19.740321211725533 35.42028465104133 24.426617483841483 46 23.65851668081217 16.739407194620355 34.68890774955931 24.91316837500816 47 17.376770908141282 16.119181301821506 38.919011555787684 27.58503623424953 48 18.335672781876347 13.178984135274533 35.17529542338578 33.31004765946334 49 20.091401710517726 14.212149898805249 40.23242149245936 25.464026898217668 50 18.536430110334923 13.72380361689626 40.95694326565255 26.782823007116274 51 15.275510870274859 12.954886727165892 40.64209701638702 31.127505386172228 52 14.101162107462297 13.09688581314879 48.88930599986943 23.91264607951949 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 207.0 1 1105.0 2 2003.0 3 27465.5 4 52928.0 5 28364.5 6 3801.0 7 3684.5 8 3568.0 9 3815.0 10 4062.0 11 4322.5 12 4583.0 13 4481.0 14 4088.0 15 3797.0 16 3520.0 17 3243.0 18 2989.0 19 2735.0 20 2587.0 21 2439.0 22 2351.0 23 2263.0 24 2228.0 25 2193.0 26 2168.0 27 2143.0 28 2297.5 29 2452.0 30 2631.0 31 2810.0 32 3320.5 33 3831.0 34 4441.5 35 5052.0 36 6042.0 37 7032.0 38 7156.0 39 8763.5 40 10247.0 41 13010.5 42 15774.0 43 20619.0 44 25464.0 45 31040.0 46 36616.0 47 47276.5 48 57937.0 49 75264.5 50 92592.0 51 95959.0 52 99326.0 53 83936.5 54 68547.0 55 52470.0 56 36393.0 57 27501.0 58 18609.0 59 14236.5 60 9864.0 61 7941.5 62 6019.0 63 4864.0 64 3003.5 65 2298.0 66 1946.0 67 1594.0 68 1540.0 69 1486.0 70 1275.0 71 1064.0 72 968.5 73 873.0 74 746.5 75 620.0 76 456.5 77 293.0 78 278.0 79 263.0 80 223.0 81 183.0 82 116.5 83 50.0 84 42.0 85 34.0 86 21.0 87 8.0 88 7.5 89 5.5 90 4.0 91 3.5 92 3.0 93 2.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 612680.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.92510191094589 #Duplication Level Percentage of deduplicated Percentage of total 1 74.42948739135569 23.017394827571373 2 11.295483161827137 6.98627935825755 3 4.371630855964426 4.055793892132064 4 2.1836044420887197 2.7011275961915118 5 1.314768193525316 2.0329670187020312 6 0.8670634618719067 1.6088415552987758 7 0.6141143723431746 1.329408468478247 8 0.4350807457761622 1.0763933122094524 9 0.40001167018656025 1.1133361499478347 >10 3.455631117388995 23.047480117431885 >50 0.41555418170772807 8.669305614772242 >100 0.20380682797129981 10.885089501318216 >500 0.007940525765115575 1.7405403976179523 >1k 0.004764315459069346 2.720658471408272 >5k 5.293683843410384E-4 0.8516075196020116 >10k+ 5.293683843410384E-4 8.163776199060575 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 49868 8.139322321603446 No Hit CCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGCT 5202 0.8490566037735849 No Hit CTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGCTT 3859 0.6298557158712542 Illumina Single End Adapter 1 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC 2485 0.40559509042240643 No Hit GCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGCT 2384 0.38911013906117387 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCG 1870 0.3052164261931188 No Hit TCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGCT 1462 0.2386237513873474 No Hit ACCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC 1247 0.20353202324214925 No Hit CGTTCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCT 1229 0.20059411111836523 No Hit AGCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC 1051 0.17154142456094534 No Hit GCCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC 1032 0.1684402950969511 No Hit CGGCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTG 964 0.1573415159626559 No Hit CGTCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTG 895 0.1460795194881504 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCT 818 0.13351178429196317 No Hit TCCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC 803 0.13106352418880982 No Hit CGTTTCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTC 797 0.13008422014754847 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTT 779 0.12714630802376445 No Hit ACTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGCT 742 0.12110726643598616 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCC 708 0.11555787686883855 No Hit GGCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC 683 0.11147744336358295 No Hit TGCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC 641 0.10462231507475353 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6497682313769014 0.0 2 0.0 0.0 0.0 2.2912450218711236 0.0 3 0.0 0.0 0.0 3.9829927531500946 0.0 4 0.0 0.0 0.0 5.178396552849775 0.0 5 0.0 0.0 0.0 10.864725468433766 0.0 6 0.0 0.0 0.0 12.615721094209048 0.0 7 0.0 0.0 0.0 18.217503427564143 0.0 8 0.0 0.0 0.0 24.87807664686296 0.0 9 0.0 0.0 0.0 30.1756218580662 0.0 10 0.0 0.0 0.0 32.79803486322387 0.0 11 0.0 0.0 0.0 35.15456682117908 0.0 12 0.0 0.0 0.0 36.85839263563361 0.0 13 0.0 0.0 0.0 37.518280342103544 0.0 14 0.0 0.0 0.0 37.979042893517004 0.0 15 0.0 0.0 0.0 39.35904550499445 0.0 16 0.0 0.0 0.0 40.98044656264282 0.0 17 0.0 0.0 0.0 43.07403538551936 0.0 18 0.0 0.0 0.0 43.99213292420187 0.0 19 0.0 0.0 0.0 45.127472742704185 0.0 20 0.0 0.0 0.0 46.18071423908076 0.0 21 0.0 0.0 0.0 47.11872429326892 0.0 22 6.528693608408957E-4 0.0 0.0 48.070281386694525 0.0 23 8.160867010511197E-4 0.0 0.0 48.74567474048443 0.0 24 0.0014689560618920154 0.0 0.0 49.34207090161259 0.0 25 0.0014689560618920154 0.0 0.0 49.8914604687602 0.0 26 0.0014689560618920154 0.0 0.0 50.4741463733107 0.0 27 0.0014689560618920154 0.0 0.0 50.99268786315858 0.0 28 0.0014689560618920154 0.0 0.0 51.52542926160475 0.0 29 0.0014689560618920154 0.0 0.0 52.167689495331985 0.0 30 0.0014689560618920154 0.0 0.0 52.7347065352223 0.0 31 0.0014689560618920154 0.0 0.0 53.212117255337205 0.0 32 0.0014689560618920154 0.0 0.0 53.678265978977606 0.0 33 0.0014689560618920154 0.0 0.0 54.13364235816413 0.0 34 0.0014689560618920154 0.0 0.0 54.67813540510544 0.0 35 0.0014689560618920154 0.0 0.0 55.104948749755174 0.0 36 0.0014689560618920154 0.0 0.0 55.533067833126594 0.0 37 0.0014689560618920154 0.0 0.0 55.98697525625123 0.0 38 0.0014689560618920154 0.0 0.0 56.44039302735523 0.0 39 0.0014689560618920154 0.0 0.0 56.88075341124241 0.0 40 0.0016321734021022393 0.0 0.0 57.31376901482013 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCTTCCA 35 1.0185249E-7 46.000004 12 ATTTAGG 110 0.0 46.000004 1 GGCACGG 35 1.0185249E-7 46.000004 1 TCGATGG 45 3.092282E-10 46.000004 1 GCTTAGG 110 0.0 46.000004 1 TCCACGG 55 1.8189894E-12 46.000004 1 GCGATTT 45 3.092282E-10 46.000004 8 GCTAGTC 70 0.0 46.000004 26 AGAATGG 45 3.092282E-10 46.000004 1 GCGTAGG 110 0.0 46.000004 1 AGCACGG 55 1.8189894E-12 46.000004 1 TATTTGG 30 1.8599694E-6 46.0 1 TGTCAGA 20 6.3091354E-4 46.0 43 CGGGTAG 20 6.3091354E-4 46.0 4 CAGCGCC 25 3.415275E-5 46.0 19 TGATAGA 20 6.3091354E-4 46.0 30 GTACCGG 30 1.8599694E-6 46.0 1 AGATCTA 20 6.3091354E-4 46.0 34 ACCGGGT 20 6.3091354E-4 46.0 3 ACACGAC 20 6.3091354E-4 46.0 25 >>END_MODULE