SRR1043310_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043310_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1670092
Sequences flagged as poor quality	0
Sequence length	52
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	73201	4.383051951629012	No Hit
CCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGCT	7925	0.47452475671998906	Illumina Single End Adapter 2 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGCTT	6936	0.41530646215897093	Illumina Single End Adapter 2 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGCT	4454	0.2666918948177705	Illumina Single End Adapter 2 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGC	4452	0.26657214093594844	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCT	3271	0.19585747372001064	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3268	0.1956778428972775	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCG	2716	0.16262577151438365	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTC	2619	0.1568177082460128	No Hit
TCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGCT	2288	0.13699844080445867	Illumina Single End Adapter 2 (95% over 21bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	2264	0.13556139422259372	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTT	2181	0.13059160812697743	No Hit
GCCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGC	1720	0.10298833836698816	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCT	1702	0.10191055343058944	No Hit
CGTCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTG	1675	0.1002938760259914	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTTACG	20	6.3122786E-4	46.000004	33
CCGTCTA	20	6.3122786E-4	46.000004	36
ATGCGGT	20	6.3122786E-4	46.000004	2
GCGTCAA	35	1.01994374E-7	46.000004	22
CGCATCG	30	1.8619139E-6	46.0	20
GCGATCG	30	1.8619139E-6	46.0	8
TCGACGA	25	3.4178258E-5	46.0	27
CGTTTTT	21085	0.0	45.312782	1
ATGACGG	90	0.0	43.444447	1
TCACGAC	355	0.0	42.760563	24
CACGACG	350	0.0	42.714287	25
CGGTCTA	345	0.0	42.666668	30
TAGACGG	135	0.0	42.592594	1
ATTGCGG	325	0.0	42.46154	1
GTGCGAT	60	1.8189894E-12	42.166668	45
TACGGGA	535	0.0	42.13084	3
ACGGGAT	510	0.0	41.941177	4
CTAGCGG	445	0.0	41.86517	1
AGGGCGC	580	0.0	41.63793	5
CGACGGT	355	0.0	41.46479	27