##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043309_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1629364 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.27925497310607 33.0 31.0 34.0 31.0 34.0 2 32.58440164383158 34.0 31.0 34.0 31.0 34.0 3 32.67348057278791 34.0 31.0 34.0 31.0 34.0 4 36.18986303858438 37.0 37.0 37.0 35.0 37.0 5 36.15336290724479 37.0 37.0 37.0 35.0 37.0 6 36.35653052356625 37.0 37.0 37.0 35.0 37.0 7 36.30695228322217 37.0 37.0 37.0 35.0 37.0 8 36.2031080838904 37.0 37.0 37.0 35.0 37.0 9 37.74408235360546 39.0 38.0 39.0 35.0 39.0 10 37.54997532779661 39.0 37.0 39.0 35.0 39.0 11 37.29785364105258 39.0 37.0 39.0 35.0 39.0 12 37.33500678792461 39.0 37.0 39.0 35.0 39.0 13 37.33089966391795 39.0 37.0 39.0 34.0 39.0 14 38.71828885381044 40.0 38.0 41.0 35.0 41.0 15 38.80062650211985 40.0 38.0 41.0 35.0 41.0 16 38.76919706093911 41.0 38.0 41.0 35.0 41.0 17 38.719629254113876 40.0 38.0 41.0 34.0 41.0 18 38.50224320655176 40.0 38.0 41.0 34.0 41.0 19 38.27072219589975 40.0 37.0 41.0 34.0 41.0 20 38.001538637161495 40.0 35.0 41.0 34.0 41.0 21 37.918031207268605 40.0 35.0 41.0 34.0 41.0 22 37.88080502576465 40.0 35.0 41.0 34.0 41.0 23 37.851593627943174 40.0 35.0 41.0 34.0 41.0 24 37.75949020599449 40.0 35.0 41.0 34.0 41.0 25 37.73466149982447 40.0 35.0 41.0 34.0 41.0 26 37.71115662307501 40.0 35.0 41.0 34.0 41.0 27 37.66605743099762 40.0 35.0 41.0 34.0 41.0 28 37.59734043467267 39.0 35.0 41.0 34.0 41.0 29 37.52571985142669 39.0 35.0 41.0 34.0 41.0 30 37.43414853893912 40.0 35.0 41.0 33.0 41.0 31 37.25934168178504 40.0 35.0 41.0 33.0 41.0 32 37.01971812314498 40.0 35.0 41.0 33.0 41.0 33 36.642709670767246 39.0 35.0 41.0 31.0 41.0 34 36.311636319447345 39.0 35.0 41.0 30.0 41.0 35 36.140859869249596 39.0 35.0 41.0 30.0 41.0 36 36.053326328555194 39.0 35.0 41.0 30.0 41.0 37 35.90171257005801 39.0 35.0 41.0 29.0 41.0 38 35.83922868063858 39.0 35.0 41.0 29.0 41.0 39 35.73241031469948 39.0 35.0 41.0 28.0 41.0 40 35.63404678144356 39.0 35.0 41.0 27.0 41.0 41 35.535956974623225 38.0 35.0 40.0 27.0 41.0 42 35.45574776415828 38.0 35.0 40.0 26.0 41.0 43 35.35505632872704 38.0 35.0 40.0 26.0 41.0 44 35.28253539417834 38.0 35.0 40.0 25.0 41.0 45 35.246190538148625 38.0 35.0 40.0 25.0 41.0 46 35.16439113666437 38.0 35.0 40.0 24.0 41.0 47 35.02536327057674 38.0 35.0 40.0 24.0 41.0 48 34.95908771766162 38.0 35.0 40.0 24.0 41.0 49 34.88926538207546 38.0 35.0 40.0 24.0 41.0 50 34.80631031494497 37.0 35.0 40.0 24.0 41.0 51 34.40745407410499 37.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 8.0 15 20.0 16 48.0 17 144.0 18 257.0 19 567.0 20 1066.0 21 1759.0 22 2895.0 23 4725.0 24 8352.0 25 15929.0 26 25145.0 27 30279.0 28 30229.0 29 28432.0 30 28893.0 31 32082.0 32 36974.0 33 48276.0 34 96826.0 35 141238.0 36 135095.0 37 135761.0 38 237529.0 39 586749.0 40 85.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.631394826447618 17.65259328179584 24.92800871996681 29.78800317178973 2 33.77888550379166 19.79938184469523 24.80857561600723 21.61315703550588 3 23.056726428225982 20.991319312320638 36.16595186833636 19.786002391117023 4 22.660989195784367 23.8829997471406 33.60550497003739 19.85050608703764 5 20.79111849776968 30.56002219270832 30.557567247097637 18.09129206242436 6 76.65340586879297 1.9325945583675594 18.47690264422192 2.9370969286175463 7 77.02477776604859 1.634134545749139 16.334901225263355 5.0061864629389135 8 67.31798419506015 3.596188451444858 22.127897756425206 6.957929597069777 9 36.45864275876968 19.13267999047481 26.55373507699937 17.854942173756143 10 26.968375390643217 19.649814283364552 38.50391932066745 14.877891005324779 11 24.75493505441387 15.961319876958127 39.724702399218344 19.55904266940966 12 21.558841363869583 17.210150709111037 40.88061354000702 20.350394387012354 13 16.58389408382657 20.00596551783395 41.95459087103926 21.45554952730022 14 16.671658389408385 20.32394234805728 41.470843838454755 21.53355542407958 15 19.071490471128612 17.435760210732532 42.3688629428415 21.123886375297353 16 18.70288038768501 21.053859051752706 38.925003866539335 21.318256694022946 17 19.782135851780204 20.014373706550533 38.83196142789456 21.3715290137747 18 19.954043418168073 26.081833156986406 36.548555141760836 17.41556828308469 19 20.355181530953182 22.310791204420866 35.20293807890686 22.13108918571909 20 18.72215171072885 27.033615570247044 35.15531213405967 19.088920584964438 21 17.60355574322251 21.29689866721003 37.166710446530054 23.932835143037405 22 17.477064670632224 23.493461252365954 34.4676818685082 24.56179220849362 23 17.71261670197697 21.290884050463863 39.13999572839464 21.856503519164534 24 20.297428935461934 20.36806999540925 36.41641769426599 22.91808337486283 25 16.019072472449373 22.45551024817045 38.29641504292473 23.22900223645545 26 16.59414348175116 20.186097152017595 37.381886429306164 25.837872936925084 27 20.340942846411238 21.202812876680717 37.646897807979066 20.80934646892898 28 18.479112095271528 21.550126306951668 34.26091407444868 25.709847523328122 29 18.892279441548972 20.382922416353864 37.2175891943114 23.507208947785763 30 21.349679997839647 20.61215296275111 32.35820847889115 25.67995856051809 31 20.555443719144403 19.993199800658417 34.46577928565993 24.985577194537257 32 19.700324789304293 19.23523534336097 33.743595660638135 27.3208442066966 33 17.422319383514058 21.686866777466545 34.788604633464345 26.10220920555505 34 17.297178531009646 19.693573688874924 34.94713274627401 28.062115033841422 35 20.437360835270695 23.037455105182143 30.898743313341893 25.62644074620527 36 20.62792598829973 23.160202385716143 31.334005170115457 24.87786645586867 37 20.539793440876316 24.151693544229527 33.69468086934534 21.613832145548812 38 22.617720779396134 21.600943681092748 31.085319179753572 24.69601635975755 39 25.397639815289892 19.990315239565867 33.57236320429321 21.039681740851034 40 20.543107617450733 19.5851878401634 36.119737517215306 23.751967025170558 41 20.97634414409549 21.948441232284498 31.75490559506654 25.320309028553474 42 20.475351118595967 18.366061849899715 33.701922958896844 27.456664072607474 43 22.157602598314437 20.214083531979348 32.818694901814446 24.809618967891765 44 18.401904055815642 22.064621533309932 34.76485303468102 24.768621376193412 45 20.18149412899757 21.620337751417118 34.071883262426326 24.12628485715899 46 22.24076388087622 19.59991751382748 33.158029758850695 25.001288846445608 47 19.578191245172963 19.31004981084644 35.58652333057561 25.525235613404984 48 20.65020461971665 18.342126130195584 32.0800631412011 28.927606108886657 49 20.618842689540212 17.46423757981642 35.86749185571794 26.049427874925428 50 19.934526600563167 17.6454125658846 36.99339128641605 25.426669547136182 51 18.16144213324954 16.887448108587154 36.132257739829775 28.818852018333533 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 246.0 1 1822.5 2 3399.0 3 47246.5 4 91094.0 5 53325.0 6 15556.0 7 14349.5 8 13143.0 9 13085.0 10 13027.0 11 12801.0 12 12575.0 13 11996.5 14 11418.0 15 10772.5 16 10127.0 17 9256.5 18 8386.0 19 7680.0 20 6974.0 21 6498.5 22 6023.0 23 5829.5 24 5636.0 25 5674.5 26 6594.0 27 7475.0 28 7964.5 29 8454.0 30 10234.5 31 12015.0 32 13273.0 33 14531.0 34 17084.5 35 19638.0 36 22762.5 37 25887.0 38 29731.5 39 33576.0 40 37284.0 41 40992.0 42 49291.5 43 57591.0 44 64841.0 45 72091.0 46 83667.5 47 95244.0 48 122092.5 49 148941.0 50 176063.0 51 203185.0 52 203426.5 53 203668.0 54 172878.0 55 142088.0 56 118589.5 57 95091.0 58 80195.0 59 65299.0 60 56853.5 61 48408.0 62 44313.5 63 40219.0 64 35404.0 65 30589.0 66 24659.5 67 18730.0 68 15319.5 69 11909.0 70 10382.0 71 8855.0 72 9011.0 73 9167.0 74 7779.5 75 4776.0 76 3160.0 77 2220.5 78 1281.0 79 969.0 80 657.0 81 520.5 82 384.0 83 364.5 84 345.0 85 239.0 86 133.0 87 77.5 88 22.0 89 16.5 90 11.0 91 10.5 92 10.0 93 9.0 94 8.0 95 4.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1629364.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.59717006231847 #Duplication Level Percentage of deduplicated Percentage of total 1 73.41189810623983 24.66432025272935 2 11.734383136661378 7.884841316376286 3 4.394508465930992 4.429291448105452 4 2.1369493635700523 2.8718180472970505 5 1.2997655731878726 2.18342225017699 6 0.8700792762223221 1.753932084656419 7 0.6202379460409716 1.4586767826569136 8 0.491522533198774 1.3211012909872626 9 0.4148541762432882 1.2544133679277913 >10 4.22140549223877 29.719089643369028 >50 0.2714034402639625 6.126329929516246 >100 0.12341409335757678 7.239487158917159 >500 0.0049733983614013 1.1840023180622816 >1k 0.004052398664845503 2.7135139891321796 >5k 3.683998786223185E-4 0.8800803347879839 >10k+ 1.8419993931115925E-4 4.315679785301656 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 69736 4.279952177659504 No Hit CCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGC 7663 0.47030620536602014 No Hit CTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGCT 6558 0.4024883328709853 Illumina Single End Adapter 2 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGC 4560 0.2798637996175195 No Hit CGCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTG 4486 0.27532215023776146 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3300 0.20253301288109962 No Hit CGTTCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTC 3147 0.19314284592024863 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCC 2580 0.1583439918888597 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTT 2446 0.15011992409308172 No Hit TCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGC 2220 0.13624948139273974 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCT 2142 0.13146233745191374 No Hit GCCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTG 1824 0.11194551984700779 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 1703 0.1045193093747008 No Hit CGTCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCT 1645 0.1009596382392148 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTC 1634 0.1002845281962778 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4147630609243852 0.0 2 0.0 0.0 0.0 1.4020808118996124 0.0 3 0.0 0.0 0.0 2.3793946595113185 0.0 4 0.0 0.0 0.0 2.9890190282834284 0.0 5 0.0 0.0 0.0 5.974048769949502 0.0 6 0.0 0.0 0.0 6.88176490949843 0.0 7 0.0 0.0 0.0 9.607306900115628 0.0 8 0.0 0.0 0.0 12.797140479352679 0.0 9 0.0 0.0 0.0 15.690293881539054 0.0 10 0.0 0.0 0.0 17.334800572493318 0.0 11 0.0 0.0 0.0 18.787698758534006 0.0 12 0.0 0.0 0.0 19.881499775372475 0.0 13 0.0 0.0 0.0 20.416677918500717 0.0 14 0.0 0.0 0.0 20.808732732526313 0.0 15 0.0 0.0 0.0 21.87890489786199 0.0 16 0.0 0.0 0.0 23.091832150458707 0.0 17 0.0 0.0 0.0 24.443893445540713 0.0 18 0.0 0.0 0.0 25.269307533491595 0.0 19 0.0 0.0 0.0 26.161618889333507 0.0 20 0.0 0.0 0.0 27.164402797656017 0.0 21 0.0 0.0 0.0 28.183205226088216 0.0 22 0.0 0.0 0.0 29.15953709545565 0.0 23 0.0 0.0 0.0 29.97439491728061 0.0 24 6.137364026699988E-5 0.0 0.0 30.69406222305145 0.0 25 6.137364026699988E-5 0.0 0.0 31.377519081064758 0.0 26 6.137364026699988E-5 0.0 0.0 32.07521462362001 0.0 27 6.137364026699988E-5 0.0 0.0 32.76585219754456 0.0 28 1.2274728053399977E-4 0.0 0.0 33.459067464360324 0.0 29 1.2274728053399977E-4 0.0 0.0 34.21267439319882 0.0 30 1.2274728053399977E-4 0.0 0.0 34.89441278928465 0.0 31 1.2274728053399977E-4 0.0 0.0 35.55227683930663 0.0 32 1.2274728053399977E-4 0.0 0.0 36.22530017847455 0.0 33 1.2274728053399977E-4 0.0 0.0 36.88463719586293 0.0 34 1.2274728053399977E-4 0.0 0.0 37.58294647482085 0.0 35 1.2274728053399977E-4 0.0 0.0 38.1759385870806 0.0 36 1.2274728053399977E-4 0.0 0.0 38.806798235385095 0.0 37 1.2274728053399977E-4 0.0 0.0 39.51676850599375 0.0 38 1.2274728053399977E-4 0.0 0.0 40.17770123802907 0.0 39 1.2274728053399977E-4 0.0 0.0 40.94204855391429 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACTACG 20 7.0341554E-4 45.0 16 TTACGAG 20 7.0341554E-4 45.0 21 ACGTAGG 90 0.0 45.0 1 TTCGATC 20 7.0341554E-4 45.0 16 ATCGATT 20 7.0341554E-4 45.0 13 GTACGTC 25 3.8915263E-5 45.0 33 GCGATAA 65 0.0 44.999996 8 CGTTTTT 19590 0.0 44.402752 1 CTAGCGG 365 0.0 42.53425 1 TCAACGG 130 0.0 41.53846 1 ACGGTCT 315 0.0 41.428574 29 ATACCGG 60 3.6379788E-12 41.250004 1 TACGCGG 180 0.0 41.25 1 TAGTAGG 360 0.0 41.25 1 ATTGCGG 350 0.0 41.14286 1 CACGACG 330 0.0 40.90909 25 TCACGTT 260 0.0 40.673077 45 CCGCACT 1180 0.0 40.614407 33 CCCGCAC 1215 0.0 40.555553 32 TGTACGG 150 0.0 40.5 1 >>END_MODULE