##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043305_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 785310 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.21743005946696 33.0 31.0 34.0 31.0 34.0 2 32.502088347276874 34.0 31.0 34.0 31.0 34.0 3 32.57189517515376 34.0 31.0 34.0 31.0 34.0 4 36.14141167182387 37.0 35.0 37.0 35.0 37.0 5 36.09435891558748 37.0 35.0 37.0 35.0 37.0 6 36.31217863009512 37.0 37.0 37.0 35.0 37.0 7 36.250450140708764 37.0 37.0 37.0 35.0 37.0 8 36.165952299092076 37.0 37.0 37.0 35.0 37.0 9 37.71358062421209 39.0 38.0 39.0 35.0 39.0 10 37.56051368249481 39.0 37.0 39.0 35.0 39.0 11 37.271823865734554 39.0 37.0 39.0 35.0 39.0 12 37.24712915918555 39.0 37.0 39.0 34.0 39.0 13 37.26143943156206 39.0 37.0 39.0 34.0 39.0 14 38.66282996523666 40.0 38.0 41.0 35.0 41.0 15 38.773544205472994 40.0 38.0 41.0 35.0 41.0 16 38.81298850135615 40.0 38.0 41.0 35.0 41.0 17 38.78379875463193 40.0 38.0 41.0 35.0 41.0 18 38.54419401255555 40.0 38.0 41.0 35.0 41.0 19 38.28882988883371 40.0 37.0 41.0 35.0 41.0 20 38.01811004571443 40.0 35.0 41.0 34.0 41.0 21 37.96955851829214 40.0 35.0 41.0 34.0 41.0 22 37.937513848034534 40.0 35.0 41.0 34.0 41.0 23 37.912447313799646 40.0 35.0 41.0 34.0 41.0 24 37.83154550432313 40.0 35.0 41.0 34.0 41.0 25 37.81568297869631 40.0 35.0 41.0 34.0 41.0 26 37.78764691650431 40.0 35.0 41.0 34.0 41.0 27 37.77536641581032 40.0 35.0 41.0 34.0 41.0 28 37.73688225032153 40.0 35.0 41.0 34.0 41.0 29 37.70727865428939 40.0 35.0 41.0 34.0 41.0 30 37.60517247965772 40.0 35.0 41.0 34.0 41.0 31 37.47834613082732 40.0 35.0 41.0 34.0 41.0 32 37.24801543339573 40.0 35.0 41.0 33.0 41.0 33 37.01922043524213 40.0 35.0 41.0 33.0 41.0 34 36.742387082808065 40.0 35.0 41.0 32.0 41.0 35 36.57172963543059 40.0 35.0 41.0 31.0 41.0 36 36.470792425920976 39.0 35.0 41.0 31.0 41.0 37 36.39148234455183 39.0 35.0 41.0 31.0 41.0 38 36.336162789217 39.0 35.0 41.0 31.0 41.0 39 36.26037488380385 39.0 35.0 41.0 30.0 41.0 40 36.208813080184896 39.0 35.0 41.0 31.0 41.0 41 36.164792247647426 39.0 35.0 41.0 30.0 41.0 42 36.057722428085725 39.0 35.0 41.0 30.0 41.0 43 35.9343927875616 39.0 35.0 41.0 30.0 41.0 44 35.82249684837835 38.0 35.0 40.0 30.0 41.0 45 35.80342667226955 38.0 35.0 40.0 30.0 41.0 46 35.716175777718355 38.0 35.0 40.0 29.0 41.0 47 35.57707020157645 38.0 35.0 40.0 29.0 41.0 48 35.58232290433077 38.0 35.0 40.0 29.0 41.0 49 35.51795851319861 38.0 35.0 40.0 28.0 41.0 50 35.40598999121366 38.0 35.0 40.0 27.0 41.0 51 35.00487323477353 38.0 35.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 4.0 14 1.0 15 8.0 16 16.0 17 47.0 18 109.0 19 211.0 20 458.0 21 733.0 22 1162.0 23 1913.0 24 3559.0 25 6710.0 26 10242.0 27 11920.0 28 11204.0 29 10667.0 30 11304.0 31 13622.0 32 16718.0 33 22419.0 34 43314.0 35 84719.0 36 73514.0 37 58663.0 38 100559.0 39 301385.0 40 128.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.918401650303704 19.715526352650546 24.699418064203947 27.666653932841808 2 32.43381594529549 20.81853026193478 26.817689829494086 19.92996396327565 3 21.14668092855051 21.881167946416067 37.008824540627266 19.963326584406158 4 23.274630400733468 24.444868905273076 34.10538513453286 18.175115559460593 5 19.827456673160917 30.2541671441851 30.60562071029275 19.312755472361236 6 73.61296812723637 1.7955966433637671 20.72735607594453 3.8640791534553234 7 74.63714966064356 1.4207128395156052 17.071347620684826 6.870789879156002 8 63.41381110644204 2.932727203270046 24.78613541149355 8.867326278794362 9 33.462199640906135 21.066839846684747 28.200073856184183 17.270886656224928 10 26.55677375813373 19.379862729368018 41.513669760986105 12.549693751512143 11 23.665431485655347 16.847614317912672 39.34930154970648 20.137652646725495 12 17.119481478651743 23.237320293896676 41.741095872967364 17.902102354484217 13 12.734970903210197 25.893214144732653 40.87226700283964 20.499547949217504 14 10.364569405712395 23.30264481542321 45.952426430326874 20.380359348537517 15 11.748863506131336 18.73272975003502 48.06191185646433 21.456494887369317 16 11.811131909691715 25.07213711782608 38.086997491436506 25.029733481045703 17 14.21718811679464 22.018438578395795 41.6489029809884 22.115470323821164 18 16.174504335867365 28.064076606690353 38.16289108759598 17.5985279698463 19 16.728680393729864 23.4279456520355 35.69074632947499 24.15262762475965 20 12.950427219824018 30.148731074352803 35.233220002292086 21.66762170353109 21 14.67356839974023 23.62697533458125 35.81833925456189 25.88111701111663 22 11.5174899084438 26.70512281774077 32.349772701226264 29.427614572589167 23 11.5025913333588 22.48373253874266 44.589143140925245 21.424532986973297 24 16.194751117393132 22.20868192178885 39.122257452471 22.474309508347023 25 12.541671441850987 26.895748175879593 37.5105372400708 23.052043142198624 26 14.366173867644624 23.22675121926373 37.60960639747361 24.797468515618036 27 19.52986718620672 22.556570016935986 38.79359743286091 19.119965363996382 28 14.888260686862512 20.966115292050272 35.07761266251544 29.06801135857177 29 16.24275763711146 21.981128471559003 36.28834473010658 25.487769161222957 30 23.609147979778687 21.441596312284318 29.74061198762272 25.20864372031427 31 18.724070749130917 20.703798499955433 32.1907272287377 28.381403522175958 32 19.391577848238274 21.9154219352867 32.10872139664591 26.58427881982911 33 17.572550967134 20.13192242553896 32.16436821127962 30.131158396047418 34 16.603252218868985 22.82678178044339 31.466809285505086 29.10315671518254 35 22.14323006201373 19.776139358979254 29.488864270160832 28.59176630884619 36 16.287071347620685 27.892042632845627 28.972507672129478 26.84837834740421 37 18.42291579121621 25.06029466070724 32.645579452700204 23.871210095376348 38 17.82098789013256 27.3865097859444 28.536119494212475 26.25638282971056 39 22.22090639365346 24.47148259922833 32.04861774331156 21.25899326380665 40 16.502655002483095 21.55798347149533 37.92744266595357 24.011918860068 41 20.12249939514332 23.996128917242874 30.60409265130967 25.277279036304133 42 20.330570093338938 18.74686429562848 35.461792158510654 25.460773452521934 43 21.668513071271217 21.114591689905897 32.88612140428621 24.33077383453668 44 15.413530962295145 25.434796449809628 32.745285301345966 26.40638728654926 45 19.85407036711617 21.48107116934714 32.946861748863505 25.717996714673184 46 23.148692872878225 21.01921534171219 31.877220460709783 23.954871324699802 47 17.69848849498924 18.649450535457333 36.41899377315964 27.23306719639378 48 18.470412957940177 17.200850619500578 32.52155199857381 31.807184423985436 49 19.994651793559232 17.762284957532696 37.055557677859696 25.187505571048373 50 18.186448663585082 17.437699761877475 37.0097159083674 27.36613566617005 51 16.210159045472487 16.549133463218347 36.681183227005896 30.559524264303267 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 213.0 1 1142.5 2 2072.0 3 26246.0 4 50420.0 5 27853.0 6 5286.0 7 4972.5 8 4659.0 9 4931.0 10 5203.0 11 5332.5 12 5462.0 13 5368.5 14 5275.0 15 4879.5 16 4484.0 17 3955.0 18 3426.0 19 3196.5 20 2967.0 21 2802.0 22 2637.0 23 2484.0 24 2331.0 25 2727.5 26 3433.5 27 3743.0 28 4184.5 29 4626.0 30 5292.5 31 5959.0 32 7108.0 33 8257.0 34 10407.0 35 12557.0 36 13803.0 37 15049.0 38 16483.0 39 17917.0 40 21582.0 41 25247.0 42 30201.0 43 35155.0 44 40199.0 45 45243.0 46 50249.0 47 55255.0 48 69881.0 49 84507.0 50 102423.0 51 120339.0 52 116517.0 53 112695.0 54 87342.0 55 61989.0 56 46738.0 57 31487.0 58 24427.0 59 17367.0 60 13610.5 61 9854.0 62 7947.0 63 6040.0 64 4964.5 65 3889.0 66 3222.5 67 2556.0 68 2321.5 69 2087.0 70 1842.5 71 1598.0 72 1612.5 73 1627.0 74 1388.0 75 958.5 76 768.0 77 596.0 78 424.0 79 298.0 80 172.0 81 144.0 82 116.0 83 86.0 84 56.0 85 33.5 86 11.0 87 7.0 88 3.0 89 4.5 90 6.0 91 4.5 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 785310.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.274138870233042 #Duplication Level Percentage of deduplicated Percentage of total 1 72.55583263486847 21.965653530333945 2 11.983435073090435 7.255763550903222 3 4.8109954505535315 4.36946233122351 4 2.457661975782641 2.9761439980373994 5 1.452467540035623 2.1986102005772112 6 0.9053831854571587 1.644581777238239 7 0.6421826295728691 1.3609068275418326 8 0.46666824904510434 1.130238350233599 9 0.3616924032588682 0.9854933440110575 >10 3.68391697320657 25.289593033917647 >50 0.480756855155571 9.817157840061611 >100 0.18245847097753734 9.4944667201266 >500 0.011881016714816386 2.3405382714207366 >1k 0.0038188982297624094 2.4877532472192088 >5k 4.243220255291566E-4 0.7634368247559516 >10k+ 4.243220255291566E-4 5.920200152398247 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 46086 5.868510524506246 No Hit CCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGC 5943 0.7567712113687589 Illumina Single End Adapter 2 (95% over 21bp) CTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGCT 4598 0.5855012670155735 Illumina Single End Adapter 2 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGC 3674 0.467840725318664 Illumina Single End Adapter 2 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTG 2420 0.30815856158714394 No Hit TCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGC 1734 0.22080452305458992 Illumina Single End Adapter 2 (95% over 21bp) GCCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTG 1543 0.1964829175739517 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCC 1533 0.19520953508805441 No Hit ACCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTG 1511 0.19240809361908034 No Hit CGTTCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTC 1297 0.16515770842087837 No Hit AGCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTG 1056 0.1344691905107537 No Hit TGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGCTT 913 0.11625982096242247 Illumina Single End Adapter 2 (95% over 23bp) TCCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTG 912 0.11613248271383275 No Hit ACTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGC 869 0.1106569380244744 Illumina Single End Adapter 2 (95% over 21bp) CGTCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCT 829 0.10556340808088527 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTT 794 0.10110656938024473 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCT 791 0.10072455463447556 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6003998421005717 0.0 2 0.0 0.0 0.0 2.1974761559129514 0.0 3 0.0 0.0 0.0 3.7231157122664933 0.0 4 0.0 0.0 0.0 4.727559817142275 0.0 5 0.0 0.0 0.0 9.79383937553323 0.0 6 0.0 0.0 0.0 11.137639912900639 0.0 7 0.0 0.0 0.0 15.267601329411315 0.0 8 0.0 0.0 0.0 20.140199411697292 0.0 9 0.0 0.0 0.0 23.78169130661777 0.0 10 0.0 0.0 0.0 25.98782646343482 0.0 11 0.0 0.0 0.0 27.991875819739974 0.0 12 0.0 0.0 0.0 29.463014605697115 0.0 13 0.0 0.0 0.0 30.07627561090525 0.0 14 0.0 0.0 0.0 30.529345099387502 0.0 15 0.0 0.0 0.0 31.924335612687983 0.0 16 0.0 0.0 0.0 33.60621920006112 0.0 17 0.0 0.0 0.0 35.41722377150425 0.0 18 0.0 0.0 0.0 36.34602895671773 0.0 19 0.0 0.0 0.0 37.35875004775184 0.0 20 0.0 0.0 0.0 38.44367192573633 0.0 21 0.0 0.0 0.0 39.47829519552788 0.0 22 0.001018705988717831 0.0 0.0 40.59021278221339 0.0 23 0.001018705988717831 0.0 0.0 41.42911716392253 0.0 24 0.002164750226025391 0.0 0.0 42.12412932472527 0.0 25 0.00229208847461512 0.0 0.0 42.738663712419296 0.0 26 0.00229208847461512 0.0 0.0 43.36007436553717 0.0 27 0.00229208847461512 0.0 0.0 43.97753753294877 0.0 28 0.002801441468974036 0.0 0.0 44.60149495103845 0.0 29 0.002801441468974036 0.0 0.0 45.402707211165016 0.0 30 0.002801441468974036 0.0 0.0 46.057862500159175 0.0 31 0.002801441468974036 0.0 0.0 46.602870204123214 0.0 32 0.002801441468974036 0.0 0.0 47.14112898091199 0.0 33 0.002801441468974036 0.0 0.0 47.69428633278578 0.0 34 0.002801441468974036 0.0 0.0 48.345494136073654 0.0 35 0.002801441468974036 0.0 0.0 48.892921266760894 0.0 36 0.002801441468974036 0.0 0.0 49.36305408055418 0.0 37 0.002801441468974036 0.0 0.0 49.87418981039335 0.0 38 0.002801441468974036 0.0 0.0 50.40340757153226 0.0 39 0.002801441468974036 0.0 0.0 50.942557716061174 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 95 0.0 45.000004 24 TCCGCGG 30 2.1646192E-6 45.000004 1 GATGTCC 35 1.211265E-7 45.000004 24 TAGACGG 35 1.211265E-7 45.000004 1 TAGCGTT 35 1.211265E-7 45.000004 16 ATTACGG 70 0.0 45.000004 1 CGATTTA 30 2.1646192E-6 45.000004 18 CCTCGTA 30 2.1646192E-6 45.000004 18 TTATCGG 35 1.211265E-7 45.000004 1 GAAGTAC 35 1.211265E-7 45.000004 10 CGTACCA 30 2.1646192E-6 45.000004 21 TCGTACC 30 2.1646192E-6 45.000004 20 CGATGGT 35 1.211265E-7 45.000004 9 GAACCGA 30 2.1646192E-6 45.000004 8 ATTGCGG 190 0.0 45.000004 1 AATACGG 30 2.1646192E-6 45.000004 1 AGTCGTA 35 1.211265E-7 45.000004 4 CTAGCGG 125 0.0 45.000004 1 GCATAAC 20 7.0319214E-4 45.0 7 CCGGGTA 20 7.0319214E-4 45.0 4 >>END_MODULE