##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043302_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2345429 Sequences flagged as poor quality 0 Sequence length 52 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.33946838723321 33.0 31.0 34.0 31.0 34.0 2 32.67002966195097 34.0 31.0 34.0 31.0 34.0 3 32.76875786902951 34.0 31.0 34.0 31.0 34.0 4 36.21673348457787 37.0 37.0 37.0 35.0 37.0 5 36.158876265280256 37.0 37.0 37.0 35.0 37.0 6 36.311076140015324 37.0 37.0 37.0 35.0 37.0 7 36.25459180388748 37.0 37.0 37.0 35.0 37.0 8 36.24297985571083 37.0 37.0 37.0 35.0 37.0 9 37.872436982743885 39.0 38.0 39.0 35.0 39.0 10 37.6773946258872 39.0 37.0 39.0 35.0 39.0 11 37.278071516980475 39.0 37.0 39.0 35.0 39.0 12 37.26809764866044 39.0 37.0 39.0 35.0 39.0 13 37.2524024389568 39.0 37.0 39.0 35.0 39.0 14 38.52059004983737 40.0 37.0 41.0 34.0 41.0 15 38.573975166163635 40.0 37.0 41.0 35.0 41.0 16 38.42372163045652 40.0 37.0 41.0 34.0 41.0 17 38.39983303694122 40.0 37.0 41.0 34.0 41.0 18 38.182206751941756 39.0 37.0 41.0 34.0 41.0 19 37.923443856113316 39.0 37.0 41.0 34.0 41.0 20 37.557137308355955 39.0 35.0 41.0 34.0 41.0 21 37.50892438014538 39.0 35.0 41.0 34.0 41.0 22 37.474330708795705 39.0 35.0 41.0 34.0 41.0 23 37.48517904400432 39.0 35.0 41.0 34.0 41.0 24 37.40207100705244 39.0 35.0 41.0 34.0 41.0 25 37.29452010698256 39.0 35.0 41.0 34.0 41.0 26 37.205767473669 39.0 35.0 41.0 33.0 41.0 27 37.24061781448085 39.0 35.0 41.0 34.0 41.0 28 37.23414607732743 39.0 35.0 41.0 33.0 41.0 29 37.11845423587753 39.0 35.0 41.0 33.0 41.0 30 37.06294669333414 39.0 35.0 41.0 33.0 41.0 31 36.92657078939503 39.0 35.0 41.0 33.0 41.0 32 36.647344686196 39.0 35.0 41.0 32.0 41.0 33 36.14558189567879 38.0 35.0 41.0 31.0 41.0 34 35.94002973443238 38.0 35.0 41.0 30.0 41.0 35 35.745726687953464 38.0 35.0 41.0 29.0 41.0 36 35.67617310095509 38.0 35.0 41.0 29.0 41.0 37 35.58216386000173 38.0 35.0 41.0 29.0 41.0 38 35.46859529749142 38.0 35.0 41.0 28.0 41.0 39 35.44183644015658 38.0 35.0 41.0 28.0 41.0 40 35.370552679275306 37.0 35.0 41.0 28.0 41.0 41 35.32897009459677 37.0 35.0 41.0 28.0 41.0 42 35.236775873411645 37.0 35.0 40.0 27.0 41.0 43 35.1150143534509 37.0 35.0 40.0 27.0 41.0 44 34.89838490101384 37.0 35.0 40.0 25.0 41.0 45 34.802033657808444 36.0 35.0 40.0 24.0 41.0 46 34.79724221027369 36.0 35.0 40.0 24.0 41.0 47 34.72565914380695 36.0 35.0 40.0 24.0 41.0 48 34.63119028544458 36.0 35.0 40.0 24.0 41.0 49 34.56749532814679 35.0 35.0 40.0 24.0 41.0 50 34.455682947554585 35.0 35.0 40.0 24.0 41.0 51 34.30850646086494 35.0 34.0 40.0 24.0 41.0 52 33.92647912172997 35.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 1.0 11 2.0 12 4.0 13 7.0 14 31.0 15 40.0 16 105.0 17 233.0 18 474.0 19 1013.0 20 1785.0 21 2774.0 22 4552.0 23 7416.0 24 12412.0 25 22530.0 26 35070.0 27 42624.0 28 44915.0 29 45553.0 30 47160.0 31 51533.0 32 59072.0 33 75491.0 34 174432.0 35 244584.0 36 238592.0 37 206270.0 38 303535.0 39 721378.0 40 1840.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.94141285027174 16.630987337497746 22.099112784910567 33.328487027319945 2 37.93817676851442 18.713676687718962 23.19533015068885 20.152816393077767 3 24.978713915450008 19.856154247261376 36.54666161286485 18.61847022442376 4 22.133179047415204 22.41811625932825 34.51871704494146 20.929987648315084 5 20.723714083862696 29.709575519020188 31.545486987668355 18.021223409448762 6 74.67115824013432 1.9307768429570882 20.265333122426643 3.132731794481948 7 74.27042131737946 1.7879458299526438 18.959516574579744 4.982116278088145 8 64.96248660692777 2.959671770068504 24.39519593217275 7.682645690830974 9 41.50349466984505 13.67519545464817 28.21833447100722 16.602975404499563 10 28.957687484890826 13.251733478182457 37.702782731858434 20.087796305068284 11 26.29339877694017 10.804846362861548 41.56263097284121 21.33912388735707 12 21.066252698333653 12.193206445388029 43.64357224200775 23.096968614270565 13 16.280603676342366 14.742505528839287 46.67726032209886 22.29963047271949 14 17.240001722499382 15.391256780742458 45.89335255938253 21.475388937375637 15 21.468652429896622 13.558756201957085 44.49684897730863 20.475742390837667 16 19.664376964725854 17.934970532043394 41.92397211768082 20.476680385549937 17 20.377764579528947 19.694392795518432 41.04494316391585 18.882899461036764 18 19.61717877624946 26.360337490497475 36.79314104157491 17.229342691678156 19 21.654545927418823 21.81690428488775 35.289663426179175 21.238886361514247 20 20.62846498444421 26.268328736448645 35.09106436391807 18.012141915189076 21 18.04561127196773 20.59806542854207 37.66773583851824 23.68858746097196 22 20.701372755261403 21.0017016076803 35.176038157624895 23.1208874794334 23 21.52544374611212 18.876504042544028 37.46764451194217 22.130407699401687 24 23.028324455781863 17.104973120056073 34.870891423274806 24.995811000887258 25 17.200350127844416 17.68853373945662 39.20046183448742 25.910654298211544 26 16.453876881372235 17.89629956822398 38.46345380738449 27.186369743019295 27 20.38236928084372 20.98260062444866 36.47857172397885 22.156458370728764 28 23.753948637967724 21.661111890404698 32.17624579554529 22.408693676082287 29 22.215168312492086 20.505886130000096 35.355706781147504 21.923238776360314 30 26.38489589750958 18.138089023372697 31.43783077637396 24.039184302743763 31 26.735663283774525 21.17237400918979 29.483731973980028 22.60823073305566 32 25.875777949364487 21.73171731056451 28.602230125064544 23.790274615006464 33 19.143192993691134 23.92688075401131 32.71201132074346 24.2179149315541 34 22.09489180870536 25.898886728184905 29.642849986079305 22.363371477030427 35 23.14928313754115 28.949885074329686 27.3493676423375 20.551464145791666 36 26.897680552257174 25.480754267129807 25.628019436955885 21.99354574365713 37 23.9116596579986 28.16823702614746 27.546772893146628 20.373330422707316 38 23.40492933275746 25.763389128385466 27.266994652151055 23.564686886706014 39 22.492729475076843 24.140274551052283 31.728992862286603 21.63800311158428 40 18.459096395584773 23.248326851931992 34.90193052102622 23.390646231457016 41 19.451878526273873 24.595628347735104 30.39418375060597 25.558309375385058 42 19.346354121143722 18.95034980807349 33.09279453780098 28.610501532981814 43 21.64610397500841 20.025291748332606 34.436258782508446 23.89234549415054 44 22.826143959164828 20.477874197001913 34.18513201636033 22.510849827472928 45 21.496579090648236 21.998875259067745 33.459337289681336 23.045208360602686 46 22.11156253290976 20.239666176209127 32.8435437610774 24.805227529803716 47 19.930511646270254 20.72175282219159 34.8711898761378 24.476545655400354 48 21.897614466266084 18.966466262675187 31.698124309028326 27.4377949620304 49 20.737229734944012 17.209900619460235 35.788761885352315 26.264107760243434 50 19.80175055394983 16.96333591850361 38.2800758411361 24.95483768641046 51 18.224171356284927 16.037279320755392 37.083365132775285 28.655184190184396 52 15.795106140497111 17.355460344354913 40.65784980061217 26.191583714535803 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 839.0 1 3956.0 2 7073.0 3 100271.0 4 193469.0 5 108848.0 6 24227.0 7 21504.5 8 18782.0 9 17901.0 10 17020.0 11 16508.5 12 15997.0 13 15299.0 14 13566.5 15 12532.0 16 11632.0 17 10732.0 18 9793.5 19 8855.0 20 8544.5 21 8234.0 22 7842.0 23 7450.0 24 7287.5 25 7125.0 26 7721.0 27 8317.0 28 8703.5 29 9090.0 30 9681.0 31 10272.0 32 11942.0 33 13612.0 34 15872.0 35 18132.0 36 20863.5 37 23595.0 38 24937.0 39 28554.5 40 30830.0 41 35881.5 42 40933.0 43 52735.0 44 64537.0 45 85334.0 46 106131.0 47 142517.5 48 178904.0 49 205953.0 50 233002.0 51 229418.0 52 225834.0 53 200427.0 54 175020.0 55 158691.0 56 142362.0 57 132103.5 58 121845.0 59 119223.0 60 116601.0 61 115748.5 62 114896.0 63 112707.0 64 93593.0 65 76668.0 66 63584.5 67 50501.0 68 41446.5 69 32392.0 70 27336.0 71 22280.0 72 21457.0 73 20634.0 74 16431.5 75 12229.0 76 9553.0 77 6877.0 78 5172.5 79 3468.0 80 2481.0 81 1494.0 82 1040.0 83 586.0 84 466.5 85 347.0 86 270.5 87 194.0 88 127.0 89 44.0 90 28.0 91 18.0 92 8.0 93 8.0 94 8.0 95 6.0 96 4.0 97 3.5 98 3.0 99 2.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2345429.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.023081735936973 #Duplication Level Percentage of deduplicated Percentage of total 1 74.13264464008641 22.256904493304845 2 9.40420457848141 5.646864054424403 3 3.5953840220537394 3.238335250986038 4 1.9487853455874165 2.3403416686546876 5 1.389487637485128 2.0858350455644983 6 1.110127128127867 1.999766250303836 7 0.9177628426695101 1.92878481877708 8 0.7772392224280775 1.8668093362667413 9 0.688268533193504 1.859754818550782 >10 5.629794195234323 30.457032209847686 >50 0.23072727538170976 4.820034603815586 >100 0.16222286688578275 8.560857218571941 >500 0.007670132646788659 1.5326054732404337 >1k 0.004545263790689575 2.792242649249113 >5k 7.101974672952462E-4 1.4084669459413186 >10k+ 4.2611848037714774E-4 7.205365162500998 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 143556 6.120671314288346 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 13822 0.5893164960440073 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 11585 0.49393948825566664 No Hit CCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGCT 8653 0.3689303747843145 No Hit CTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGCTT 6809 0.29030936344694297 Illumina Single End Adapter 2 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC 6472 0.27594098989992877 No Hit CGTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCT 5765 0.24579725073749834 No Hit CGTTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTC 5329 0.22720790098527816 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 4108 0.17514919445440472 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 3965 0.16905222882466278 No Hit GGGCCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCT 3950 0.16841268697538914 No Hit GCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGCT 3945 0.1681995063589646 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTT 3748 0.1598001900718376 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCG 3333 0.14210619890860052 No Hit CGTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTG 2795 0.11916796458131967 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCT 2531 0.10791202803410377 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 2381 0.10151660954136749 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 2364 0.10079179544552404 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA 2357 0.10049334258252969 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3002009440490418 0.0 2 4.2636123284908645E-5 0.0 0.0 0.9666888232387337 0.0 3 4.2636123284908645E-5 0.0 0.0 1.661060727056756 0.0 4 4.2636123284908645E-5 0.0 0.0 2.124089025930864 0.0 5 4.2636123284908645E-5 0.0 0.0 4.440552240123235 0.0 6 4.2636123284908645E-5 0.0 0.0 5.6676625043861915 0.0 7 4.2636123284908645E-5 0.0 0.0 8.54781790452834 0.0 8 4.2636123284908645E-5 0.0 0.0 12.202032122908005 0.0 9 4.2636123284908645E-5 0.0 0.0 15.667538859628666 0.0 10 4.2636123284908645E-5 0.0 0.0 17.502341789071423 0.0 11 4.2636123284908645E-5 0.0 0.0 18.81719719505472 0.0 12 4.2636123284908645E-5 0.0 0.0 19.676954621094904 0.0 13 4.2636123284908645E-5 0.0 0.0 20.194045524294275 0.0 14 4.2636123284908645E-5 0.0 0.0 20.50989392558888 0.0 15 4.2636123284908645E-5 0.0 0.0 21.111958622495074 0.0 16 4.2636123284908645E-5 0.0 0.0 21.744849236536258 0.0 17 4.2636123284908645E-5 0.0 0.0 22.601707406193068 0.0 18 4.2636123284908645E-5 0.0 0.0 23.09091428476411 0.0 19 4.2636123284908645E-5 0.0 0.0 23.658742174672522 0.0 20 4.2636123284908645E-5 0.0 0.0 24.26822555703029 0.0 21 4.2636123284908645E-5 0.0 0.0 24.956244678478864 0.0 22 4.2636123284908645E-5 0.0 0.0 25.533793604496235 0.0 23 4.2636123284908645E-5 0.0 0.0 26.0692606768314 0.0 24 4.2636123284908645E-5 0.0 0.0 26.49310637840668 0.0 25 4.2636123284908645E-5 0.0 0.0 26.92138623680359 0.0 26 8.527224656981729E-5 0.0 0.0 27.320929348106464 0.0 27 8.527224656981729E-5 0.0 0.0 27.770484632022544 0.0 28 8.527224656981729E-5 0.0 0.0 28.17514407811961 0.0 29 8.527224656981729E-5 0.0 0.0 28.63036996643258 0.0 30 8.527224656981729E-5 0.0 0.0 29.02586264602339 0.0 31 8.527224656981729E-5 0.0 0.0 29.44885562513297 0.0 32 8.527224656981729E-5 0.0 0.0 29.93874468167657 0.0 33 8.527224656981729E-5 0.0 0.0 30.425265484480665 0.0 34 1.2790836985472593E-4 0.0 0.0 30.936771055529714 0.0 35 1.2790836985472593E-4 0.0 0.0 31.42341976670366 0.0 36 1.2790836985472593E-4 0.0 0.0 31.91684762147991 0.0 37 1.2790836985472593E-4 0.0 0.0 32.65018894198034 0.0 38 1.2790836985472593E-4 0.0 0.0 33.36135947837261 0.0 39 1.2790836985472593E-4 0.0 0.0 34.150937845485835 0.0 40 1.2790836985472593E-4 0.0 0.0 34.813844290319594 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGAAA 20 6.3128053E-4 46.0 13 ACGCAAT 25 3.418251E-5 46.0 43 CGTTTTT 33975 0.0 45.411037 1 ATTACGG 150 0.0 44.46667 1 TACGGGA 330 0.0 43.21212 3 CGACGGT 320 0.0 42.40625 27 GCATAGG 380 0.0 42.368423 1 TATGCGG 370 0.0 42.270267 1 ACTACGG 120 0.0 42.166668 1 CACTTAC 4015 0.0 41.93275 36 TAGCATA 745 0.0 41.677853 29 ACTTACT 3960 0.0 41.527775 37 GTTTTTT 37815 0.0 41.42007 2 TATACGG 100 0.0 41.4 1 TTACGGG 745 0.0 41.369125 2 CGTTCAG 1435 0.0 41.351917 38 GTCCCCC 1725 0.0 41.2 9 TCGGCGT 1705 0.0 41.143696 4 TCACGAC 330 0.0 41.121212 24 ACCCGCA 4125 0.0 41.093334 31 >>END_MODULE