SRR1043301_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043301_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2290013
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	136114	5.943809052612365	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	13359	0.5833591337691096	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	9591	0.41881858312594733	No Hit
CCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC	7964	0.3477709515186158	No Hit
CGCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTG	6577	0.28720360976116727	No Hit
CTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGCT	6566	0.28672326314304764	No Hit
CGTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTC	5632	0.2459374684772532	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTT	5140	0.22445287428499314	No Hit
GCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC	4148	0.18113434290547695	No Hit
GGGCCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTC	4087	0.1784706025686317	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3948	0.1724007680305745	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3943	0.17218242865870192	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCT	3679	0.1606541098238307	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCC	3141	0.1371607934103431	No Hit
CGTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCT	2772	0.12104734776614806	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTC	2365	0.10327452289572155	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2295	0.10021777168950569	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2294	0.10017410381513117	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTCTA	230	0.0	45.000004	30
CGATAGA	20	7.0347567E-4	45.0	9
CGTTTTT	32090	0.0	44.432064	1
ATAACGG	125	0.0	43.2	1
CTATCGG	75	0.0	42.0	1
TATACGG	135	0.0	41.666668	1
TACGGGT	65	0.0	41.53846	3
ACGGGTA	130	0.0	41.53846	4
ACTACGG	65	0.0	41.53846	1
CACGACG	235	0.0	41.17021	25
CTCGAGG	290	0.0	41.12069	1
CATATTA	335	0.0	40.97015	28
CACTTAC	3840	0.0	40.957027	36
CGCACTT	3835	0.0	40.717083	34
GTTTTTT	35475	0.0	40.687103	2
GCACTTA	3885	0.0	40.366795	35
TCACGAC	240	0.0	40.312496	24
ACTTACT	3830	0.0	40.30026	37
CCGCACT	3900	0.0	39.980766	33
ACCCGCA	3950	0.0	39.93038	31