##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043301_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2290013 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.32901341608105 33.0 31.0 34.0 31.0 34.0 2 32.62565452685203 34.0 31.0 34.0 31.0 34.0 3 32.69904013645338 34.0 31.0 34.0 31.0 34.0 4 36.20076174240059 37.0 37.0 37.0 35.0 37.0 5 36.18374175168438 37.0 37.0 37.0 35.0 37.0 6 36.33865353602796 37.0 37.0 37.0 35.0 37.0 7 36.2920044558699 37.0 37.0 37.0 35.0 37.0 8 36.206837253762316 37.0 37.0 37.0 35.0 37.0 9 37.8403035266612 39.0 38.0 39.0 35.0 39.0 10 37.63332871909461 39.0 37.0 39.0 35.0 39.0 11 37.28219097446172 39.0 37.0 39.0 35.0 39.0 12 37.277749078280344 39.0 37.0 39.0 35.0 39.0 13 37.27565083691665 39.0 37.0 39.0 35.0 39.0 14 38.54537332320821 40.0 37.0 41.0 35.0 41.0 15 38.60532232786451 40.0 37.0 41.0 35.0 41.0 16 38.49459326213432 40.0 37.0 41.0 34.0 41.0 17 38.443227178186326 40.0 37.0 41.0 34.0 41.0 18 38.246341396315216 40.0 37.0 41.0 34.0 41.0 19 38.00909252480226 40.0 37.0 41.0 34.0 41.0 20 37.663803655263095 39.0 35.0 41.0 34.0 41.0 21 37.6166401675449 39.0 35.0 41.0 34.0 41.0 22 37.599512317178984 39.0 35.0 41.0 34.0 41.0 23 37.57384739737285 39.0 35.0 41.0 34.0 41.0 24 37.494114662231176 39.0 35.0 41.0 34.0 41.0 25 37.45323760170794 39.0 35.0 41.0 34.0 41.0 26 37.438403188104175 39.0 35.0 41.0 34.0 41.0 27 37.41300857244042 39.0 35.0 41.0 34.0 41.0 28 37.339242615653276 39.0 35.0 41.0 34.0 41.0 29 37.26192995410943 39.0 35.0 41.0 34.0 41.0 30 37.158225739329865 39.0 35.0 41.0 33.0 41.0 31 37.008220040672256 39.0 35.0 41.0 33.0 41.0 32 36.738238603885655 39.0 35.0 41.0 33.0 41.0 33 36.22881092814757 38.0 35.0 41.0 31.0 41.0 34 35.970218946355324 38.0 35.0 41.0 30.0 41.0 35 35.77531088251464 38.0 35.0 41.0 30.0 41.0 36 35.68320179841774 38.0 35.0 41.0 29.0 41.0 37 35.53911222338039 38.0 35.0 41.0 29.0 41.0 38 35.42878883220314 38.0 35.0 41.0 28.0 41.0 39 35.355824617589505 38.0 35.0 41.0 27.0 41.0 40 35.26241423083624 37.0 35.0 40.0 27.0 41.0 41 35.188746526766444 37.0 35.0 40.0 27.0 41.0 42 35.08066591761706 37.0 35.0 40.0 26.0 41.0 43 34.955469248427846 37.0 35.0 40.0 26.0 41.0 44 34.83155554138776 36.0 35.0 40.0 25.0 41.0 45 34.76389042332948 36.0 35.0 40.0 24.0 41.0 46 34.68966289711019 36.0 35.0 40.0 24.0 41.0 47 34.55635710364963 36.0 35.0 40.0 23.0 41.0 48 34.48901163443177 36.0 35.0 40.0 23.0 41.0 49 34.407996373819714 35.0 34.0 40.0 24.0 41.0 50 34.324837893933356 35.0 34.0 40.0 24.0 41.0 51 33.89767175994197 35.0 34.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 3.0 13 7.0 14 13.0 15 35.0 16 72.0 17 173.0 18 452.0 19 859.0 20 1510.0 21 2587.0 22 4046.0 23 6316.0 24 10606.0 25 19129.0 26 31849.0 27 41186.0 28 45036.0 29 44689.0 30 46021.0 31 50548.0 32 56962.0 33 72896.0 34 166945.0 35 243921.0 36 226200.0 37 202027.0 38 314462.0 39 701325.0 40 137.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.244468481183294 16.62759119708054 22.242930498647826 32.88500982308834 2 37.668519785695544 18.77727331678903 23.25052303196532 20.30368386555011 3 25.04383162890342 19.999406116908506 36.212327178928675 18.744435075259396 4 22.303235833159025 22.484894190556997 34.083605638919956 21.128264337364026 5 20.869488513820663 29.83860790309924 31.266241720025167 18.025661863054925 6 75.05219402684614 1.892871350511984 19.922157647139993 3.1327769755018857 7 74.62507854758903 1.749160375945464 18.572951332590687 5.052809743874817 8 65.28565558361458 2.904961674890055 24.110518149896965 7.698864591598388 9 41.75487213391365 13.596735040368765 27.861239215672573 16.787153610045007 10 29.310968977032008 13.220754642004215 37.37472232690382 20.093554054059958 11 26.60194505446039 10.708236154117902 41.31867373678665 21.37114505463506 12 21.21494506799743 12.178227809187108 43.5162158468096 23.090611276005856 13 16.34606441098806 14.67572454828859 46.525238066334126 22.45297297438923 14 17.362914533672953 15.338995892163057 45.79991467297347 21.498174901190517 15 21.58241023085895 13.478264097190715 44.36476998165513 20.574555690295206 16 19.734167447957716 17.855007809999332 41.86570119907616 20.545123542966788 17 20.491717732606755 19.596831983049878 40.93382875992407 18.977621524419295 18 19.735521152063328 26.543735777919164 36.603154654580564 17.117588415436945 19 21.79354440345972 21.97677480433517 34.925478588986174 21.30420220321893 20 20.72363781340979 26.476181576261794 34.674912325825225 18.12526828450319 21 18.055661692750217 20.680013606909657 37.445682622762405 23.818642077577724 22 20.837654633401645 21.09066629752757 34.78565405523899 23.2860250138318 23 21.687431468729653 18.942730892794057 37.11035701544053 22.259480623035767 24 23.117860029615553 17.11086356278327 34.58661588383996 25.18466052376122 25 17.061999211358188 17.65352423763533 39.150869449212735 26.133607101793743 26 16.51274468747557 17.769462444099663 38.28043770930558 27.437355159119186 27 20.39503705874159 21.04686741952993 36.296387837099616 22.261707684628863 28 23.83968999302624 21.718348323786806 31.865757967312845 22.5762037158741 29 22.34943644424726 20.611979058634162 35.005041456096535 22.03354304102204 30 26.572949585875715 18.109547849728365 31.05178878897194 24.265713775423983 31 26.99783800353972 21.23302356798848 29.072236707826548 22.696901720645254 32 26.095441379590422 21.712496828620623 28.134993120126396 24.057068671662563 33 19.267881885386675 23.956370553354937 32.348724657894955 24.42702290336343 34 22.174022592884842 25.94251648353088 29.29136210143785 22.592098822146426 35 23.222226249370635 29.12197441673912 26.946440915400917 20.709358418489327 36 27.097750100108602 25.455357677008823 25.297891322014326 22.14900090086825 37 24.093182003770284 28.055255581518534 27.274692327074124 20.576870087637054 38 23.629429177912964 25.779023961872703 27.02844918347625 23.563097676738078 39 22.625985092661047 24.296936305601758 31.451087832252483 21.625990769484716 40 18.564217757715788 23.29598128918919 34.6523360347736 23.487464918321425 41 19.567749178716454 24.583921575991052 30.207383102191997 25.640946143100496 42 19.47696366789184 18.88273123340348 32.92422357427665 28.716081524428027 43 21.81900277422006 19.909974310189504 34.20674904465608 24.064273870934358 44 22.89476085943617 20.352635552723935 34.17814658694077 22.57445700089912 45 21.661623754974315 21.905596169104715 33.36295470811738 23.06982536780359 46 22.212057311465045 20.198575291930656 32.723307684279526 24.866059712324777 47 20.163815663928546 20.56036363112349 34.69888598885683 24.57693471609113 48 22.13424115932966 18.86203266094996 31.444319311724435 27.559406867995946 49 20.915296114039528 17.090339661827247 35.550715214280444 26.44364900985278 50 19.960192365720193 16.82121455205713 38.17497979269113 25.043613289531546 51 18.252996817048636 16.035891499305897 36.838611833207935 28.87249985043753 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 628.0 1 3576.0 2 6524.0 3 94780.5 4 183037.0 5 103858.0 6 24679.0 7 21458.5 8 18238.0 9 17518.0 10 16798.0 11 16101.0 12 15404.0 13 14609.0 14 13814.0 15 12762.5 16 11711.0 17 10819.5 18 9928.0 19 9118.5 20 8309.0 21 7899.5 22 7490.0 23 7306.5 24 7123.0 25 6959.5 26 7293.5 27 7791.0 28 8407.0 29 9023.0 30 9819.5 31 10616.0 32 12455.0 33 14294.0 34 16757.5 35 19221.0 36 21496.0 37 23771.0 38 25628.0 39 27485.0 40 31037.0 41 34589.0 42 41521.5 43 48454.0 44 59139.5 45 69825.0 46 98286.5 47 126748.0 48 170117.5 49 213487.0 50 234833.5 51 256180.0 52 228249.5 53 200319.0 54 177362.0 55 154405.0 56 141597.5 57 128790.0 58 123020.5 59 117251.0 60 116236.5 61 115222.0 62 111704.5 63 108187.0 64 103138.5 65 98090.0 66 79608.5 67 61127.0 68 49954.0 69 38781.0 70 31851.0 71 24921.0 72 22823.5 73 20726.0 74 17437.0 75 11172.0 76 8196.0 77 6290.0 78 4384.0 79 3127.0 80 1870.0 81 1343.5 82 817.0 83 658.5 84 500.0 85 350.5 86 201.0 87 126.5 88 52.0 89 41.0 90 30.0 91 23.0 92 16.0 93 13.0 94 10.0 95 7.0 96 4.0 97 3.0 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2290013.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.930349843039593 #Duplication Level Percentage of deduplicated Percentage of total 1 73.61835367936345 22.034230804919698 2 9.76968924184473 5.84820433732386 3 3.6026918060428264 3.234894783945418 4 2.0538641794914883 2.458914936890708 5 1.4089663060655402 2.1085427228798412 6 1.12407795527215 2.0186427871286443 7 0.9190342749152234 1.9254912156169806 8 0.7921258330708767 1.8966882642816418 9 0.6812093411409831 1.8349950507026516 >10 5.615344250213279 30.179953858618063 >50 0.23271936286396988 4.871028661554286 >100 0.1691295065302785 8.933232539005708 >500 0.006764782833574334 1.3795407290882455 >1k 0.004852996380607675 2.8711454839648476 >5k 8.823629782923045E-4 1.825331951862981 >10k+ 2.941209927641015E-4 6.57916187221643 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 136114 5.943809052612365 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 13359 0.5833591337691096 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 9591 0.41881858312594733 No Hit CCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC 7964 0.3477709515186158 No Hit CGCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTG 6577 0.28720360976116727 No Hit CTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGCT 6566 0.28672326314304764 No Hit CGTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTC 5632 0.2459374684772532 No Hit CGTTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTT 5140 0.22445287428499314 No Hit GCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC 4148 0.18113434290547695 No Hit GGGCCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTC 4087 0.1784706025686317 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3948 0.1724007680305745 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3943 0.17218242865870192 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCT 3679 0.1606541098238307 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCC 3141 0.1371607934103431 No Hit CGTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCT 2772 0.12104734776614806 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTC 2365 0.10327452289572155 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 2295 0.10021777168950569 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 2294 0.10017410381513117 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.29659220275168746 0.0 2 0.0 0.0 0.0 0.9545797338268386 0.0 3 0.0 0.0 0.0 1.6758420148706579 0.0 4 0.0 0.0 0.0 2.1579353479652736 0.0 5 0.0 0.0 0.0 4.506611971198417 0.0 6 0.0 0.0 0.0 5.742631155368987 0.0 7 0.0 0.0 0.0 8.696413513809746 0.0 8 0.0 0.0 0.0 12.437483979348588 0.0 9 0.0 0.0 0.0 16.05012722635199 0.0 10 0.0 0.0 0.0 17.958893683136296 0.0 11 0.0 0.0 0.0 19.31840561603799 0.0 12 0.0 0.0 0.0 20.18870635232202 0.0 13 0.0 0.0 0.0 20.718528672107976 0.0 14 0.0 0.0 0.0 21.03996789537876 0.0 15 0.0 0.0 0.0 21.66428749531116 0.0 16 0.0 0.0 0.0 22.299960742580936 0.0 17 0.0 0.0 0.0 23.179999414850485 0.0 18 0.0 0.0 0.0 23.693140606625377 0.0 19 0.0 0.0 0.0 24.281477878073183 0.0 20 0.0 0.0 0.0 24.90942191157867 0.0 21 0.0 0.0 0.0 25.61714715156639 0.0 22 0.0 0.0 0.0 26.208410170597286 0.0 23 0.0 0.0 0.0 26.761551135299232 0.0 24 4.366787437451228E-5 0.0 0.0 27.193164405616912 0.0 25 4.366787437451228E-5 0.0 0.0 27.627747091392056 0.0 26 4.366787437451228E-5 0.0 0.0 28.03171859723067 0.0 27 4.366787437451228E-5 0.0 0.0 28.47774226609194 0.0 28 4.366787437451228E-5 0.0 0.0 28.893809773132293 0.0 29 4.366787437451228E-5 0.0 0.0 29.35472418715527 0.0 30 4.366787437451228E-5 0.0 0.0 29.760922754586982 0.0 31 4.366787437451228E-5 0.0 0.0 30.198256516447724 0.0 32 4.366787437451228E-5 0.0 0.0 30.68131054277858 0.0 33 4.366787437451228E-5 0.0 0.0 31.181700715236115 0.0 34 4.366787437451228E-5 0.0 0.0 31.707592926328367 0.0 35 4.366787437451228E-5 0.0 0.0 32.2127865649671 0.0 36 4.366787437451228E-5 0.0 0.0 32.71160469394715 0.0 37 4.366787437451228E-5 0.0 0.0 33.46815061748558 0.0 38 4.366787437451228E-5 0.0 0.0 34.196661765675564 0.0 39 4.366787437451228E-5 0.0 0.0 34.990325382432324 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGTCTA 230 0.0 45.000004 30 CGATAGA 20 7.0347567E-4 45.0 9 CGTTTTT 32090 0.0 44.432064 1 ATAACGG 125 0.0 43.2 1 CTATCGG 75 0.0 42.0 1 TATACGG 135 0.0 41.666668 1 TACGGGT 65 0.0 41.53846 3 ACGGGTA 130 0.0 41.53846 4 ACTACGG 65 0.0 41.53846 1 CACGACG 235 0.0 41.17021 25 CTCGAGG 290 0.0 41.12069 1 CATATTA 335 0.0 40.97015 28 CACTTAC 3840 0.0 40.957027 36 CGCACTT 3835 0.0 40.717083 34 GTTTTTT 35475 0.0 40.687103 2 GCACTTA 3885 0.0 40.366795 35 TCACGAC 240 0.0 40.312496 24 ACTTACT 3830 0.0 40.30026 37 CCGCACT 3900 0.0 39.980766 33 ACCCGCA 3950 0.0 39.93038 31 >>END_MODULE