SRR1043299_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043299_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2496260
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	118034	4.7284337368703575	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	12773	0.5116854814802946	No Hit
CCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC	8841	0.3541698380777643	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	7660	0.3068590611554886	No Hit
CTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGCT	6967	0.27909752990473746	No Hit
CGCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTG	5040	0.20190204546000817	No Hit
GCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC	4849	0.19425059889594834	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTC	3345	0.13400046469518398	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCC	3195	0.12799147524696947	No Hit
GGGCCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTC	3126	0.12522734010079078	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3013	0.1207005680498025	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2912	0.11665451515467139	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTT	2745	0.10996450690232588	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	27590	0.0	44.478073	1
TAGTAGG	395	0.0	41.58228	1
GCACTTA	3335	0.0	40.952026	35
GCGATAT	55	6.184564E-11	40.909092	8
CACAACG	55	6.184564E-11	40.909092	11
CCGCACT	3355	0.0	40.7079	33
CGCACTT	3375	0.0	40.666664	34
ACCCGCA	3425	0.0	40.40146	31
TCGGCGT	1115	0.0	40.358746	4
CACTTAC	3390	0.0	40.353985	36
CCCGCAC	3435	0.0	40.349346	32
CTTGCGG	580	0.0	40.34483	1
GTTTTTT	31385	0.0	39.996017	2
AACGCAA	3880	0.0	39.72294	17
CGCAAGC	3905	0.0	39.6991	19
CTTACTG	3385	0.0	39.682423	38
CTTAATC	4335	0.0	39.65398	10
CAACGCA	3910	0.0	39.59079	16
AGGGACT	5095	0.0	39.568203	5
ACGCAAG	3905	0.0	39.526245	18