##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043299_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2496260 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.3281613293487 33.0 31.0 34.0 31.0 34.0 2 32.619606531370934 34.0 31.0 34.0 31.0 34.0 3 32.70672846578481 34.0 31.0 34.0 31.0 34.0 4 36.194055907637825 37.0 37.0 37.0 35.0 37.0 5 36.170697763854726 37.0 37.0 37.0 35.0 37.0 6 36.338545263714515 37.0 37.0 37.0 35.0 37.0 7 36.28677541602237 37.0 37.0 37.0 35.0 37.0 8 36.191799331800375 37.0 37.0 37.0 35.0 37.0 9 37.790943651702946 39.0 38.0 39.0 35.0 39.0 10 37.56518591813353 39.0 37.0 39.0 35.0 39.0 11 37.08897110076675 39.0 35.0 39.0 34.0 39.0 12 37.065475150825634 39.0 35.0 39.0 34.0 39.0 13 37.02123656990858 39.0 35.0 39.0 34.0 39.0 14 38.274518679945196 40.0 36.0 41.0 34.0 41.0 15 38.3242402634341 40.0 36.0 41.0 34.0 41.0 16 38.185255542291266 40.0 36.0 41.0 33.0 41.0 17 38.12167122014534 40.0 36.0 41.0 33.0 41.0 18 37.97819257609384 39.0 36.0 41.0 34.0 41.0 19 37.81326384270869 39.0 35.0 41.0 34.0 41.0 20 37.56981524360443 39.0 35.0 41.0 34.0 41.0 21 37.50219969073734 39.0 35.0 41.0 34.0 41.0 22 37.48245735620488 39.0 35.0 41.0 34.0 41.0 23 37.4603386666453 39.0 35.0 41.0 34.0 41.0 24 37.38867065129433 39.0 35.0 41.0 34.0 41.0 25 37.34390207750795 39.0 35.0 41.0 34.0 41.0 26 37.31922155544695 39.0 35.0 41.0 34.0 41.0 27 37.29752069095367 39.0 35.0 41.0 34.0 41.0 28 37.22989792729924 39.0 35.0 41.0 34.0 41.0 29 37.15146539222677 39.0 35.0 41.0 33.0 41.0 30 37.05575060290194 39.0 35.0 41.0 33.0 41.0 31 36.934608574427344 39.0 35.0 41.0 33.0 41.0 32 36.743095270524705 39.0 35.0 41.0 33.0 41.0 33 36.34948763349971 38.0 35.0 41.0 31.0 41.0 34 36.10077155424515 38.0 35.0 41.0 31.0 41.0 35 35.97497656494115 38.0 35.0 41.0 30.0 41.0 36 35.95349723185886 38.0 35.0 41.0 30.0 41.0 37 35.873788387427595 38.0 35.0 41.0 30.0 41.0 38 35.793912092490366 38.0 35.0 41.0 30.0 41.0 39 35.744533421999314 38.0 35.0 41.0 30.0 41.0 40 35.678803890620365 38.0 35.0 41.0 30.0 41.0 41 35.59707282094013 37.0 35.0 41.0 30.0 41.0 42 35.478303942698275 37.0 35.0 40.0 29.0 41.0 43 35.36083460857443 37.0 35.0 40.0 29.0 41.0 44 35.24978447757846 37.0 35.0 40.0 29.0 41.0 45 35.185646527204696 37.0 35.0 40.0 28.0 41.0 46 35.100868899874214 36.0 35.0 40.0 27.0 41.0 47 34.981544791007344 36.0 35.0 40.0 27.0 41.0 48 34.933116342047704 36.0 35.0 40.0 27.0 41.0 49 34.87229254965428 36.0 35.0 40.0 27.0 41.0 50 34.81240095182393 35.0 35.0 40.0 27.0 41.0 51 34.39679440442902 35.0 34.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 1.0 11 0.0 12 2.0 13 6.0 14 20.0 15 48.0 16 96.0 17 248.0 18 524.0 19 1046.0 20 1914.0 21 3004.0 22 4725.0 23 6978.0 24 11242.0 25 19134.0 26 30085.0 27 38723.0 28 42021.0 29 43712.0 30 48722.0 31 55266.0 32 63547.0 33 82297.0 34 209451.0 35 294368.0 36 215337.0 37 204042.0 38 325488.0 39 793861.0 40 351.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.447677725877913 17.95670322802913 23.998782178138494 29.596836867954462 2 35.46645782090007 19.810957191959172 23.960444825458886 20.762140161681877 3 25.917452508953392 20.97838366195829 33.53757220802321 19.566591621065115 4 23.381939381314446 23.37112320030766 31.765160680377846 21.481776738000047 5 21.56494115196334 30.731854854862874 29.381835225497344 18.321368767676443 6 77.40131236329549 2.083476881414596 17.483915938243612 3.031294817046301 7 77.1659202166441 1.945790903191174 16.0289392931826 4.859349586982125 8 67.81537179620713 3.2332369224359643 21.699742815251614 7.251648466105294 9 43.95059008276381 14.069688253627428 25.72692748351534 16.252794180093417 10 33.38686675266198 14.562225088732744 34.277318869028065 17.773589289577206 11 30.516132133671974 12.090006649948323 37.18030173139016 20.213559484989542 12 23.500677012811167 13.687556584650636 39.9692740339548 22.8424923685834 13 17.075064296187094 16.295057405879195 44.331680193569575 22.29819810436413 14 19.6060105918454 16.15196333715238 43.20311185533558 21.038914215666637 15 24.429506541786512 13.79563827485919 42.059681283199666 19.715173900154632 16 21.709397258298416 18.10376322979177 39.56555006289409 20.621289449015727 17 22.711416278753013 19.11050932194563 39.18750450674209 18.990569892559268 18 21.771129609896406 26.871559853540898 34.61542467531427 16.741885861248427 19 23.650300850071705 22.857675081922558 32.61274867201333 20.879275395992405 20 21.813192536033906 27.874219832869972 32.77126581365723 17.541321817438888 21 18.980514850215926 21.8366676548116 36.40982910434009 22.77298839063239 22 21.764760081081295 21.60976821324702 33.75317474942514 22.872296956246547 23 23.516741044602725 18.74476216419764 36.05597974569957 21.68251704550007 24 24.42738336551481 17.40635991443199 32.918445995208835 25.247810724844367 25 17.554741893873235 18.079366732632018 37.93495068622659 26.43094068726815 26 16.17079150409012 17.848501358031616 37.32163316321216 28.6590739746661 27 19.898528198184483 21.743528318364273 35.741349058191055 22.61659442526019 28 22.85987837805357 22.540640798634755 31.52720469822855 23.072276125083125 29 22.18887455633628 19.706080296122998 34.83455249052583 23.270492657014895 30 26.319814442405836 18.44010639917316 33.30534479581454 21.93473436260646 31 26.76560133960405 19.792729923966252 30.113970499867804 23.327698236561897 32 25.198617131228318 18.11858540376403 30.43052406399974 26.25227340100791 33 19.081105333579035 22.77334892999928 35.2081113345565 22.93743440186519 34 17.143406536178123 24.839079262576817 35.665515611354586 22.351998589890478 35 17.756483699614623 29.469726711159893 29.857586950077312 22.916202639148164 36 20.38289280764023 28.68162771506173 28.90456122359049 22.030918253707547 37 19.60464855423714 28.921786993342042 30.49534103018115 20.97822342223967 38 19.780431525562243 24.7758646935816 29.20004326472403 26.243660516132135 39 20.672085439817966 21.914864637497697 31.975996090150865 25.43705383253347 40 16.75770953346206 22.410165607749192 34.904457067773386 25.927667791015356 41 18.028650861689087 23.705102833839423 30.367910393949348 27.898335910522142 42 17.752037047422945 18.483491302989272 33.45164365891373 30.312827990674045 43 20.309503016512704 19.438600145818143 33.153517662422985 27.09837917524617 44 20.590843902478106 20.268321408827607 33.815507999967956 25.325326688726335 45 20.468621057101423 22.076466393725013 33.296411431501525 24.15850111767204 46 20.590803842548453 20.50307259660452 32.86124041566183 26.0448831451852 47 17.774230248451683 20.31955805885605 36.07492809242627 25.831283600265998 48 20.438536049930697 18.747165759976923 32.768181199073815 28.046116991018565 49 19.512951375257384 17.329965628580357 36.26625431645742 26.890828679704835 50 18.108129762124136 17.416495076634643 38.559444929614706 25.91593023162651 51 16.514465640598335 16.10974017129626 37.12113321529007 30.254660972815334 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 722.0 1 4450.0 2 8178.0 3 86780.5 4 165383.0 5 93793.0 6 22203.0 7 18895.0 8 15587.0 9 14857.0 10 14127.0 11 13681.0 12 13235.0 13 12515.5 14 11796.0 15 11074.5 16 10353.0 17 9690.5 18 9028.0 19 8535.5 20 8043.0 21 7987.0 22 7931.0 23 7779.0 24 7627.0 25 7729.0 26 8765.0 27 9699.0 28 10658.5 29 11618.0 30 13582.0 31 15546.0 32 17276.5 33 19007.0 34 22138.5 35 25270.0 36 28166.0 37 31062.0 38 35014.0 39 38966.0 40 46276.5 41 53587.0 42 66153.0 43 78719.0 44 109405.5 45 140092.0 46 179905.0 47 219718.0 48 241278.5 49 262839.0 50 237201.0 51 211563.0 52 183354.0 53 155145.0 54 145137.5 55 135130.0 56 131154.0 57 127178.0 58 125212.0 59 123246.0 60 125807.0 61 128368.0 62 126295.0 63 124222.0 64 117528.0 65 110834.0 66 87417.0 67 64000.0 68 49939.0 69 35878.0 70 29646.0 71 23414.0 72 21524.5 73 19635.0 74 16994.5 75 10887.0 76 7420.0 77 5646.0 78 3872.0 79 2989.0 80 2106.0 81 1497.5 82 889.0 83 706.0 84 523.0 85 347.5 86 172.0 87 132.5 88 93.0 89 56.0 90 19.0 91 16.5 92 14.0 93 13.0 94 12.0 95 8.0 96 4.0 97 3.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2496260.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.828768335657383 #Duplication Level Percentage of deduplicated Percentage of total 1 72.46881663338168 20.16717909649613 2 11.089713852896445 6.172261554419713 3 4.125005967266759 3.4438150633881284 4 2.08110066867795 2.316578735672814 5 1.2525954799433117 1.7429094714816997 6 0.915699138470429 1.5289667513792775 7 0.6744103668315137 1.3137606903203936 8 0.5678643379611131 1.2642372085761016 9 0.48219839821907584 1.2077088764277357 >10 5.763437785174609 34.51080377280872 >50 0.39646335610827005 7.350651349387801 >100 0.1702254265893773 8.447213716009442 >500 0.005944327065767208 1.132988222062433 >1k 0.005654359891827343 2.97301984013719 >5k 5.799343478797276E-4 1.1502164536361184 >10k+ 2.899671739398638E-4 5.2776891977963984 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 118034 4.7284337368703575 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 12773 0.5116854814802946 No Hit CCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC 8841 0.3541698380777643 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 7660 0.3068590611554886 No Hit CTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGCT 6967 0.27909752990473746 No Hit CGCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTG 5040 0.20190204546000817 No Hit GCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC 4849 0.19425059889594834 No Hit CGTTCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTC 3345 0.13400046469518398 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCC 3195 0.12799147524696947 No Hit GGGCCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTC 3126 0.12522734010079078 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3013 0.1207005680498025 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 2912 0.11665451515467139 No Hit CGTTTCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTT 2745 0.10996450690232588 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.28795077435844024 0.0 2 0.0 0.0 0.0 1.0049433953193978 0.0 3 0.0 0.0 0.0 1.709477378157724 0.0 4 0.0 0.0 0.0 2.1968865422672317 0.0 5 0.0 0.0 0.0 4.579771337921531 0.0 6 0.0 0.0 0.0 5.517133631913342 0.0 7 0.0 0.0 0.0 8.05256663969298 0.0 8 0.0 0.0 0.0 11.165784012883273 0.0 9 0.0 0.0 0.0 14.163708908527157 0.0 10 0.0 0.0 0.0 15.874307964715214 0.0 11 0.0 0.0 0.0 17.200852475303055 0.001602397186190541 12 0.0 0.0 0.0 18.09258650941809 0.001602397186190541 13 0.0 0.0 0.0 18.607837324637657 0.001602397186190541 14 0.0 0.0 0.0 18.921226154326874 0.001602397186190541 15 0.0 0.0 0.0 19.652880709541474 0.001602397186190541 16 0.0 0.0 0.0 20.41518111094197 0.001602397186190541 17 0.0 0.0 0.0 21.3510211276069 0.001602397186190541 18 0.0 0.0 0.0 21.974313573105366 0.001602397186190541 19 0.0 0.0 0.0 22.631937378317964 0.001602397186190541 20 0.0 0.0 0.0 23.3786144071531 0.001602397186190541 21 0.0 0.0 0.0 24.09216187416375 0.001602397186190541 22 4.005992965476353E-5 0.0 0.0 24.760722040172098 0.001602397186190541 23 8.011985930952706E-5 0.0 0.0 25.387900298847075 0.001602397186190541 24 1.2017978896429058E-4 0.0 0.0 25.921618741637488 0.001602397186190541 25 1.2017978896429058E-4 0.0 0.0 26.419844086753784 0.001602397186190541 26 1.2017978896429058E-4 0.0 0.0 26.893232275484124 0.001602397186190541 27 1.2017978896429058E-4 0.0 0.0 27.400190685265155 0.001602397186190541 28 1.2017978896429058E-4 0.0 0.0 27.875021031463067 0.001602397186190541 29 1.2017978896429058E-4 0.0 0.0 28.398444072332207 0.001602397186190541 30 1.2017978896429058E-4 0.0 0.0 28.850920977782764 0.001602397186190541 31 1.2017978896429058E-4 0.0 0.0 29.353673094950047 0.001602397186190541 32 1.2017978896429058E-4 0.0 0.0 29.91899882223807 0.001602397186190541 33 1.2017978896429058E-4 0.0 0.0 30.448470912485078 0.001602397186190541 34 1.2017978896429058E-4 0.0 0.0 31.01259484188346 0.001602397186190541 35 1.2017978896429058E-4 0.0 0.0 31.516508697010728 0.001602397186190541 36 1.2017978896429058E-4 0.0 0.0 32.06136380024517 0.001602397186190541 37 1.602397186190541E-4 0.0 0.0 32.843974585980625 0.001602397186190541 38 1.602397186190541E-4 0.0 0.0 33.60126749617427 0.001602397186190541 39 1.602397186190541E-4 0.0 0.0 34.56454856465272 0.001602397186190541 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 27590 0.0 44.478073 1 TAGTAGG 395 0.0 41.58228 1 GCACTTA 3335 0.0 40.952026 35 GCGATAT 55 6.184564E-11 40.909092 8 CACAACG 55 6.184564E-11 40.909092 11 CCGCACT 3355 0.0 40.7079 33 CGCACTT 3375 0.0 40.666664 34 ACCCGCA 3425 0.0 40.40146 31 TCGGCGT 1115 0.0 40.358746 4 CACTTAC 3390 0.0 40.353985 36 CCCGCAC 3435 0.0 40.349346 32 CTTGCGG 580 0.0 40.34483 1 GTTTTTT 31385 0.0 39.996017 2 AACGCAA 3880 0.0 39.72294 17 CGCAAGC 3905 0.0 39.6991 19 CTTACTG 3385 0.0 39.682423 38 CTTAATC 4335 0.0 39.65398 10 CAACGCA 3910 0.0 39.59079 16 AGGGACT 5095 0.0 39.568203 5 ACGCAAG 3905 0.0 39.526245 18 >>END_MODULE