##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043297_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 794912 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.13456332273258 33.0 31.0 34.0 30.0 34.0 2 32.434317257759346 34.0 31.0 34.0 31.0 34.0 3 32.513444255464755 34.0 31.0 34.0 31.0 34.0 4 36.08909917072582 37.0 35.0 37.0 35.0 37.0 5 36.04176059739946 37.0 35.0 37.0 35.0 37.0 6 36.272815104061834 37.0 37.0 37.0 35.0 37.0 7 36.19537508554406 37.0 37.0 37.0 35.0 37.0 8 36.09944497000926 37.0 37.0 37.0 35.0 37.0 9 37.66820981441971 39.0 38.0 39.0 35.0 39.0 10 37.506862394831124 39.0 37.0 39.0 35.0 39.0 11 37.24742235618534 39.0 37.0 39.0 34.0 39.0 12 37.25299907411135 39.0 37.0 39.0 34.0 39.0 13 37.27420771104223 39.0 37.0 39.0 34.0 39.0 14 38.67114598848678 40.0 38.0 41.0 35.0 41.0 15 38.79812985588342 40.0 38.0 41.0 35.0 41.0 16 38.849458808019 40.0 38.0 41.0 35.0 41.0 17 38.79684166297653 40.0 38.0 41.0 35.0 41.0 18 38.57263319713377 40.0 38.0 41.0 35.0 41.0 19 38.327156968318505 40.0 37.0 41.0 35.0 41.0 20 38.06522482991828 40.0 35.0 41.0 34.0 41.0 21 38.01207177649853 40.0 35.0 41.0 34.0 41.0 22 37.96846191779719 40.0 35.0 41.0 34.0 41.0 23 37.932553540517695 40.0 35.0 41.0 34.0 41.0 24 37.84368080995129 40.0 35.0 41.0 34.0 41.0 25 37.8029995773117 40.0 35.0 41.0 34.0 41.0 26 37.77883589630047 40.0 35.0 41.0 34.0 41.0 27 37.75631893844853 40.0 35.0 41.0 34.0 41.0 28 37.66129709955316 40.0 35.0 41.0 34.0 41.0 29 37.58078755887444 40.0 35.0 41.0 34.0 41.0 30 37.4223171873113 39.0 35.0 41.0 33.0 41.0 31 37.27237731975363 39.0 35.0 41.0 33.0 41.0 32 36.938447274666885 39.0 35.0 41.0 32.0 41.0 33 36.72827306670424 39.0 35.0 41.0 32.0 41.0 34 36.39600358278652 39.0 35.0 41.0 31.0 41.0 35 36.21132653677388 39.0 35.0 41.0 30.0 41.0 36 36.17712778269796 39.0 35.0 41.0 30.0 41.0 37 36.11049776579043 39.0 35.0 41.0 30.0 41.0 38 36.12184241777706 39.0 35.0 41.0 30.0 41.0 39 36.10437130147739 39.0 35.0 41.0 30.0 41.0 40 36.08372876494505 39.0 35.0 41.0 30.0 41.0 41 36.06567267823357 39.0 35.0 41.0 30.0 41.0 42 35.94147150879594 39.0 35.0 41.0 30.0 41.0 43 35.821796626544824 38.0 35.0 40.0 30.0 41.0 44 35.7124021275311 38.0 35.0 40.0 29.0 41.0 45 35.68890896099191 38.0 35.0 40.0 29.0 41.0 46 35.60604192665352 38.0 35.0 40.0 28.0 41.0 47 35.46607800611891 38.0 35.0 40.0 28.0 41.0 48 35.48310379010507 38.0 35.0 40.0 27.0 41.0 49 35.40928429813614 38.0 35.0 40.0 27.0 41.0 50 35.312428293949516 38.0 35.0 40.0 27.0 41.0 51 34.925426965500584 38.0 35.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 1.0 14 0.0 15 5.0 16 16.0 17 50.0 18 92.0 19 220.0 20 442.0 21 777.0 22 1185.0 23 2114.0 24 3570.0 25 6895.0 26 10493.0 27 12313.0 28 12017.0 29 11925.0 30 12788.0 31 15042.0 32 18644.0 33 24389.0 34 43014.0 35 76386.0 36 78394.0 37 62954.0 38 111042.0 39 290118.0 40 25.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.02689102693128 20.257462461253574 25.298523610160622 27.417122901654523 2 32.61656636206272 20.121724165693813 26.557656696590314 20.704052775653153 3 21.31896360855038 21.60880701260014 38.19252948754076 18.879699891308725 4 22.244978060464554 24.160032808663097 35.34642828388551 18.248560846986837 5 19.849618574131476 29.595225635038847 30.958269594621797 19.596886196207883 6 72.51582565114127 1.4885924479690833 21.753980314802142 4.2416015860875165 7 73.13325248580975 1.4187733988164728 17.733786884585967 7.71418723078781 8 60.198738979912235 3.2945785193832773 26.68785978825329 9.818822712451189 9 33.02277484803349 18.844979066865264 29.269780805925688 18.862465279175556 10 25.48093373857735 19.735140493538907 42.51237872871462 12.271547039169116 11 22.577341894448693 16.451632381949196 40.41428485165653 20.556740871945575 12 18.03935529970613 19.77564812205628 43.90964031238678 18.27535626585081 13 13.194793889134898 23.35415744132684 42.54823175395516 20.90281691558311 14 11.461394468821705 23.06569783825128 43.962224749406225 21.51068294352079 15 11.99679964574695 19.068651624330744 47.662508554406024 21.27204017551628 16 12.803052413348897 25.591763616601586 38.798634314238555 22.806549655810958 17 14.230883418541925 22.50878084618172 41.031963286502155 22.228372448774202 18 16.494027011795016 29.206000161024114 38.4351978583793 15.864774968801578 19 15.987555855239322 23.77609093836802 35.78572219314842 24.450631013244234 20 13.083586610844975 30.642259772150883 35.075580693208806 21.19857292379534 21 14.29617366450626 24.453272815104064 36.08764240570025 25.16291111468942 22 12.012776256994485 27.296480616722352 32.0567559679562 28.633987158326956 23 11.440385854031641 23.62211162996659 42.924122418582186 22.01338009741959 24 17.138626665593172 22.102320760033813 38.20209029427157 22.556962280101445 25 12.356084698683627 26.62772734592005 37.98093373857735 23.035254216818966 26 14.674202930638863 23.58286200233485 36.05820518497645 25.68472988204984 27 19.521531943158486 24.736448814459965 36.59650376393865 19.145515478442896 28 14.04281228613985 25.489110744333964 32.78778028259732 27.68029668692887 29 15.89999899359929 30.281339318062876 31.1143875045288 22.704274183809027 30 18.588975886639027 24.143930397326997 29.65586127772634 27.61123243830764 31 16.36004991747514 29.869595628195324 29.030257437301238 24.7400970170283 32 12.730088361982206 31.29465903143996 27.709733907652673 28.265518698925163 33 10.948759107926412 26.96940038645787 33.6076194597641 28.474221045851618 34 11.568198744011916 28.18865484481301 29.800531379574092 30.442615031600983 35 13.667173221689948 28.564042309085785 31.81647779880037 25.952306670423898 36 12.660898313272412 25.836947989211385 32.24029829717 29.261855400346203 37 12.498112998671552 23.531409766112475 36.018200756813336 27.952276478402645 38 11.947863411295842 22.712702789742764 30.357196771466526 34.98223702749487 39 18.29963568294352 20.60743830763657 32.70173302202004 28.391192987399865 40 12.556232639587778 18.215601223783263 37.718514753834384 31.509651382794573 41 16.441568374864136 23.846916388229136 29.396587295197456 30.314927941709268 42 17.103528440884023 20.078071534962362 35.0143160500785 27.804083974075116 43 20.537619258483957 23.70212048629282 33.55415442212472 22.20610583309851 44 13.658241415401957 25.752536129785437 34.80787810474619 25.78134435006642 45 16.934327321766435 22.108359164284852 34.163152650859466 26.79416086308925 46 20.637001328448935 19.847731572803028 32.32332635562176 27.19194074312628 47 14.576204661648081 18.739055392294997 37.343253089650176 29.341486856406746 48 16.18443299384083 17.044905599613543 32.064807173624246 34.70585423292138 49 18.22478463024838 16.87545288031883 38.22599231109859 26.673770178334205 50 16.585357876091944 15.876348576949399 38.871598365605244 28.666695181353408 51 14.54412563906445 15.654940421078056 36.568198744011916 33.23273519584558 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 256.0 1 1265.5 2 2275.0 3 28240.5 4 54206.0 5 29985.0 6 5764.0 7 5436.5 8 5109.0 9 5276.0 10 5443.0 11 5547.0 12 5651.0 13 5473.0 14 5295.0 15 4970.5 16 4646.0 17 4161.0 18 3676.0 19 3342.0 20 3008.0 21 2838.5 22 2669.0 23 2621.0 24 2573.0 25 2797.0 26 3173.5 27 3326.0 28 3768.0 29 4210.0 30 4762.5 31 5315.0 32 6467.0 33 7619.0 34 8484.5 35 9350.0 36 11044.0 37 12738.0 38 14845.0 39 16952.0 40 20311.5 41 23671.0 42 30091.5 43 36512.0 44 45647.0 45 54782.0 46 73106.0 47 91430.0 48 112475.0 49 133520.0 50 128744.0 51 123968.0 52 97739.5 53 71511.0 54 53998.0 55 36485.0 56 28535.0 57 20585.0 58 17327.0 59 14069.0 60 11137.5 61 8206.0 62 6910.5 63 5615.0 64 4574.5 65 3534.0 66 2779.5 67 2025.0 68 1889.5 69 1754.0 70 1561.0 71 1368.0 72 1170.5 73 973.0 74 859.0 75 592.0 76 439.0 77 367.5 78 296.0 79 236.5 80 177.0 81 115.0 82 53.0 83 55.0 84 57.0 85 43.0 86 29.0 87 17.0 88 5.0 89 3.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 794912.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.06798641392027 #Duplication Level Percentage of deduplicated Percentage of total 1 73.27868578246719 23.49899900102091 2 11.993132550418615 7.691912233743384 3 4.588218477518357 4.414047834034699 4 2.329841600996544 2.9885331522937375 5 1.3741028524243355 2.2032355801436343 6 0.8999752656268005 1.731623675459072 7 0.6562146821716652 1.4730438458747181 8 0.4804236705464556 1.2324975792007558 9 0.371968666679695 1.073545753453965 >10 3.518278598118649 23.85860236564515 >50 0.3160972222775365 6.936404039413659 >100 0.17644475679580646 10.282116813487937 >500 0.011077249305566325 2.2785151575042057 >1k 0.004351776512901056 2.6234640836319305 >5k 7.912320932547375E-4 1.4838259065795765 >10k+ 3.9561604662736874E-4 6.229632978512613 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 49104 6.177287548810435 No Hit CTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGCT 5911 0.7436043234974438 TruSeq Adapter, Index 13 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGC 5785 0.7277535123384726 TruSeq Adapter, Index 19 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGC 4703 0.5916378165130228 TruSeq Adapter, Index 19 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTG 2513 0.3161356225594783 No Hit TCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGC 2039 0.2565063805804919 TruSeq Adapter, Index 19 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCC 1867 0.2348687653476108 No Hit ACCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTG 1704 0.21436335091179903 No Hit GCCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTG 1631 0.2051799444466809 No Hit AGCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTG 1407 0.17700072460851013 No Hit CGTTCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTC 1314 0.16530131637212672 No Hit ACTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGC 1250 0.15725011070407793 TruSeq Adapter, Index 13 (95% over 21bp) TCCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTG 1148 0.14441850167062517 No Hit TGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGCTT 1103 0.13875749768527837 TruSeq Adapter, Index 19 (95% over 23bp) GGCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTG 899 0.11309427961837286 No Hit TGCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTG 892 0.11221367899843002 No Hit CGTCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCT 865 0.10881707660722194 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTC 841 0.10579787448170364 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCT 811 0.10202387182480577 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.7639839378446922 0.0 2 0.0 0.0 0.0 2.5517289964172134 0.0 3 0.0 0.0 0.0 4.2526719938810835 0.0 4 0.0 0.0 0.0 5.33455275552514 0.0 5 0.0 0.0 0.0 10.853402640795458 0.0 6 0.0 0.0 0.0 12.204369791876333 0.0 7 0.0 0.0 0.0 16.8026146290407 0.0 8 0.0 0.0 0.0 22.33769272573568 0.0 9 0.0 0.0 0.0 26.582816714302968 0.0 10 0.0 0.0 0.0 29.089886679280223 0.0 11 0.0 0.0 0.0 31.33906646270279 0.0 12 0.0 0.0 0.0 32.909428968238 0.0 13 0.0 0.0 0.0 33.56975363310656 0.0 14 0.0 0.0 0.0 34.052951773278046 0.0 15 0.0 0.0 0.0 35.58783865383841 0.0 16 0.0 0.0 0.0 37.281107845899925 0.0 17 0.0 0.0 0.0 39.25340163439475 0.0 18 1.2580008856326235E-4 0.0 0.0 40.250241536170044 0.0 19 1.2580008856326235E-4 0.0 0.0 41.35665331508393 0.0 20 1.2580008856326235E-4 0.0 0.0 42.56873716839097 0.0 21 5.032003542530494E-4 0.0 0.0 43.70395716758585 0.0 22 5.032003542530494E-4 0.0 0.0 44.83968036713498 0.0 23 6.290004428163117E-4 0.0 0.0 45.722671188760515 0.0 24 0.0026418018598285092 0.0 0.0 46.43256108852301 0.0 25 0.0026418018598285092 0.0 0.0 47.11049776579043 0.0 26 0.0026418018598285092 0.0 0.0 47.79346644660038 0.0 27 0.0026418018598285092 0.0 0.0 48.45240731049475 0.0 28 0.0026418018598285092 0.0 0.0 49.146320599009705 0.0 29 0.0026418018598285092 0.0 0.0 49.931942152087274 0.0 30 0.0026418018598285092 0.0 0.0 50.63264864538465 0.0 31 0.0026418018598285092 0.0 0.0 51.227305664023184 0.0 32 0.0026418018598285092 0.0 0.0 51.821836882573166 0.0 33 0.0026418018598285092 0.0 0.0 52.44656012237833 0.0 34 0.0026418018598285092 0.0 0.0 53.119338996014655 0.0 35 0.0026418018598285092 0.0 0.0 53.68569099472646 0.0 36 0.0026418018598285092 0.0 0.0 54.19052675013083 0.0 37 0.003019202125518296 0.0 0.0 54.717377521033775 0.0 38 0.003019202125518296 0.0 0.0 55.23227728352321 0.0 39 0.003019202125518296 0.0 0.0 55.75019624813816 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTGTCGG 35 1.2113014E-7 45.000004 1 ATAGCGG 70 0.0 45.000004 1 GTCTATG 30 2.1646538E-6 45.000004 21 CGCGATA 30 2.1646538E-6 45.000004 10 GCCGATG 30 2.1646538E-6 45.000004 8 GTGCTCG 30 2.1646538E-6 45.000004 9 GGGCGTA 35 1.2113014E-7 45.000004 6 CGGGCGT 30 2.1646538E-6 45.000004 5 GCGATCC 30 2.1646538E-6 45.000004 8 GAACCCA 30 2.1646538E-6 45.000004 8 TTCGATT 35 1.2113014E-7 45.000004 39 CCGTTGG 35 1.2113014E-7 45.000004 1 TCTGCGG 80 0.0 45.0 1 ACAACGG 25 3.889716E-5 45.0 1 TATCAGG 25 3.889716E-5 45.0 1 GTACCTC 40 6.8102963E-9 45.0 9 GTCGATG 20 7.031973E-4 45.0 40 CGACGGT 90 0.0 45.0 27 CCATGCA 45 3.8380676E-10 45.0 10 GCACCGA 180 0.0 45.0 8 >>END_MODULE