SRR1043296_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043296_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2185999
Sequences flagged as poor quality	0
Sequence length	52
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	105701	4.835363602636598	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	12953	0.59254372943446	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	8840	0.4043917677912936	No Hit
CCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGCT	7219	0.33023802847119327	No Hit
CTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGCTT	6117	0.2798262945225501	Illumina Single End Adapter 2 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGC	4615	0.21111629053810183	No Hit
GCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGCT	3725	0.17040263970843536	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCT	3469	0.15869174688552007	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3168	0.1449222986835767	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3042	0.1391583436222981	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTC	2995	0.137008296893091	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCG	2711	0.12401652516766933	No Hit
GGGCCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCT	2407	0.11010983994045744	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2350	0.1075023364603552	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA	2285	0.10452886757953686	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTT	2215	0.10132667032327096	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATACGTT	20	6.3127093E-4	46.000004	32
TACGTTA	20	6.3127093E-4	46.000004	35
TACCGGA	20	6.3127093E-4	46.000004	34
AAGTCGA	20	6.3127093E-4	46.000004	27
CGTTTTT	26490	0.0	45.296715	1
TATACGG	90	0.0	43.444447	1
AATGCGG	265	0.0	41.660378	1
CACTTAC	3085	0.0	41.45219	36
ACTTACT	3070	0.0	41.429966	37
ATAGCGG	285	0.0	41.157898	1
CATGCGG	305	0.0	40.72131	1
TAGCATA	1175	0.0	40.714893	29
TAAACGG	85	0.0	40.588234	1
GTTTTTT	30095	0.0	40.51271	2
GGCGATA	335	0.0	40.50746	7
GCACTTA	3165	0.0	40.477093	35
CGCACTT	3175	0.0	40.349606	34
ACAACGG	200	0.0	40.25	1
TACGCGG	200	0.0	40.25	1
ACCCGCA	3190	0.0	40.231976	31