##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043296_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2185999 Sequences flagged as poor quality 0 Sequence length 52 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.31847864523268 33.0 31.0 34.0 31.0 34.0 2 32.65793945925867 34.0 31.0 34.0 31.0 34.0 3 32.77526018996349 34.0 31.0 34.0 31.0 34.0 4 36.21974483977348 37.0 37.0 37.0 35.0 37.0 5 36.15307921000879 37.0 37.0 37.0 35.0 37.0 6 36.310940215434684 37.0 37.0 37.0 35.0 37.0 7 36.24740541967311 37.0 37.0 37.0 35.0 37.0 8 36.22569497973238 37.0 37.0 37.0 35.0 37.0 9 37.8149198604391 39.0 38.0 39.0 35.0 39.0 10 37.616074389787 39.0 37.0 39.0 35.0 39.0 11 37.22539992012805 39.0 37.0 39.0 35.0 39.0 12 37.2212361487814 39.0 37.0 39.0 34.0 39.0 13 37.191845009993145 39.0 37.0 39.0 34.0 39.0 14 38.48571339694117 40.0 37.0 41.0 34.0 41.0 15 38.54078570026793 40.0 37.0 41.0 35.0 41.0 16 38.39562689644414 40.0 37.0 41.0 34.0 41.0 17 38.35399604482893 40.0 37.0 41.0 34.0 41.0 18 38.14538661728574 40.0 37.0 41.0 34.0 41.0 19 37.932784049763974 40.0 37.0 41.0 34.0 41.0 20 37.63684750084515 39.0 35.0 41.0 34.0 41.0 21 37.56705423927458 39.0 35.0 41.0 34.0 41.0 22 37.51981817009065 39.0 35.0 41.0 34.0 41.0 23 37.52742476094454 39.0 35.0 41.0 34.0 41.0 24 37.45118639121061 39.0 35.0 41.0 34.0 41.0 25 37.34163007393874 39.0 35.0 41.0 33.0 41.0 26 37.24073707261531 39.0 35.0 41.0 33.0 41.0 27 37.27175721489351 39.0 35.0 41.0 33.0 41.0 28 37.23252389410974 39.0 35.0 41.0 33.0 41.0 29 37.14943922664192 39.0 35.0 41.0 33.0 41.0 30 37.08413132851388 39.0 35.0 41.0 33.0 41.0 31 36.95327353763657 39.0 35.0 41.0 33.0 41.0 32 36.66388456719331 39.0 35.0 41.0 32.0 41.0 33 36.27583223963048 39.0 35.0 41.0 31.0 41.0 34 35.97660291701872 38.0 35.0 41.0 30.0 41.0 35 35.82494411022146 38.0 35.0 41.0 30.0 41.0 36 35.772159090649176 38.0 35.0 41.0 30.0 41.0 37 35.670376793402006 38.0 35.0 41.0 29.0 41.0 38 35.55679714400601 38.0 35.0 41.0 29.0 41.0 39 35.52217087016051 38.0 35.0 41.0 29.0 41.0 40 35.45418090310197 38.0 35.0 40.0 29.0 41.0 41 35.40804273012019 37.0 35.0 40.0 29.0 41.0 42 35.33275038094711 37.0 35.0 40.0 28.0 41.0 43 35.23077915406183 37.0 35.0 40.0 28.0 41.0 44 35.05043369187268 37.0 35.0 40.0 27.0 41.0 45 34.961235572385895 37.0 35.0 40.0 26.0 41.0 46 34.921642233139174 36.0 35.0 40.0 26.0 41.0 47 34.84404338702808 36.0 35.0 40.0 26.0 41.0 48 34.7418672195184 36.0 35.0 40.0 25.0 41.0 49 34.6818429468632 36.0 35.0 40.0 26.0 41.0 50 34.573157169788274 35.0 35.0 40.0 26.0 41.0 51 34.45181859644035 35.0 34.0 40.0 25.0 41.0 52 34.04430285649719 35.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 5.0 13 15.0 14 13.0 15 41.0 16 118.0 17 223.0 18 498.0 19 999.0 20 1804.0 21 3072.0 22 4557.0 23 7117.0 24 12084.0 25 21333.0 26 31960.0 27 38631.0 28 39907.0 29 39930.0 30 41687.0 31 46577.0 32 54200.0 33 70283.0 34 164500.0 35 223622.0 36 206287.0 37 203447.0 38 300258.0 39 671354.0 40 1475.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.88363626881805 16.961261189963945 23.2267260872489 30.928376453969104 2 35.77755525048273 19.0343179479954 23.266158859176056 21.92196794234581 3 25.287157038955645 20.563412883537456 34.56236713740491 19.587062940101983 4 22.88267286490067 23.202755353501992 32.537206101192176 21.377365680405163 5 21.144977650950437 31.12384772362659 29.647314568762383 18.083860056660594 6 77.36815067161513 1.9977593768341158 17.85705299956679 2.777036951983967 7 77.0995778131646 1.891995376027162 16.532486977349944 4.475939833458295 8 68.0805434952166 3.279873412567892 21.671007168804742 6.968575923410761 9 42.320650649885934 14.3917723658611 26.016617573933015 17.27095941031995 10 29.884048437350614 15.540080301958051 34.83624649416582 19.73962476652551 11 26.773571259639183 12.332256327656141 39.38583686451824 21.508335548186437 12 22.264328574715726 13.712174616731298 41.347182683981096 22.676314124571878 13 17.534820464236258 16.39392332750381 43.832087754843435 22.239168453416493 14 17.914875532879933 16.523246350981864 43.55665304512948 22.005225071008724 15 22.063184841347137 14.025120780018655 42.53428295255396 21.37741142608025 16 20.922150467589418 17.890218614006688 39.13130792832018 22.05632299008371 17 21.5172102091538 18.9649675045597 38.914061717320095 20.603760568966408 18 21.406963132188075 24.980020576404655 35.22311766839783 18.389898623009433 19 23.3165705931247 21.391089382932012 33.48679482470028 21.805545199243 20 21.910028321147447 25.644979709505815 33.93985999078682 18.505131978559916 21 19.53468414212449 19.965791384168064 36.12202018390676 24.37750428980068 22 21.329378467236264 21.38486797111984 33.9316715149458 23.3540820466981 23 22.373020298728406 19.11734634828287 36.48505786141713 22.02457549157159 24 24.369132831259304 17.69346646544669 33.29617259660228 24.641228106691724 25 18.808425804403388 18.34799558462744 36.87837917583677 25.9651994351324 26 17.377729815978874 18.054445587578037 36.83688784853058 27.73093674791251 27 21.32009209519309 21.01025663781182 35.336887162345455 22.332764104649634 28 23.474667646234057 21.880522360714714 31.344067403507502 23.300742589543727 29 22.729790818751518 18.956001352242154 33.902257045863244 24.411950783143084 30 26.342784237321244 19.819633952257067 30.624396442999284 23.2131853674224 31 28.35005871457398 17.996302834539264 29.411312630975583 24.24232581991117 32 25.120505544604548 19.578005296434263 28.797268434249055 26.504220724712134 33 24.217302935637207 20.973888826115658 32.01241171656529 22.79639652168185 34 23.004356360638774 22.571693765642163 31.611771094131335 22.81217877958773 35 25.215748040140916 25.38701984767605 28.132309301147895 21.264922811035138 36 27.56675552001625 22.34273666181915 27.927643150797415 22.162864667367185 37 25.104952015074115 25.885144503725755 29.572977846741928 19.436925634458206 38 24.656049705420724 22.133724672335163 29.29937296403155 23.910852658212562 39 25.624394155715535 20.237200474474143 32.19896257958032 21.939442790230004 40 21.786194778680137 20.05403479141573 34.182952508212495 23.976817921691637 41 21.98564592207041 22.90970855887857 29.730754680125653 25.373890838925362 42 21.296167107121274 18.313686328310304 32.155778662295816 28.2343679022726 43 23.93152970335302 18.571371716089534 32.48793800912077 25.009160571436674 44 22.807970177479493 19.909386966782694 32.932951936391554 24.34969091934626 45 23.443240367447558 21.015471644772024 31.969227799280787 23.57206018849963 46 23.15870226839079 20.258426467715676 31.94658369011148 24.636287573782056 47 21.30979931829795 20.747036023346762 33.46657523631072 24.47658942204457 48 23.07128228329473 18.67846234147408 31.035787299079274 27.21446807615191 49 22.05833579978765 17.214509247259492 34.97023557650301 25.75691937644985 50 21.210851423079333 17.42676917967483 36.16451791606492 25.197861481180915 51 19.95092403976397 16.195387097615324 35.78976934573163 28.063919516889076 52 17.76199348673078 17.29639400566972 38.75591891853564 26.185693589063856 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 521.0 1 3332.0 2 6143.0 3 73790.5 4 141438.0 5 80523.0 6 19608.0 7 17731.0 8 15854.0 9 15572.5 10 15291.0 11 14667.0 12 14043.0 13 13369.5 14 11871.0 15 11046.0 16 10311.0 17 9576.0 18 8971.0 19 8366.0 20 7920.0 21 7474.0 22 7278.5 23 7083.0 24 6871.0 25 6659.0 26 7433.0 27 8207.0 28 8502.5 29 8798.0 30 9307.0 31 9816.0 32 12066.5 33 14317.0 34 16172.5 35 18028.0 36 19583.5 37 21139.0 38 23815.0 39 28131.0 40 29771.0 41 34737.0 42 39703.0 43 47771.0 44 55839.0 45 65856.5 46 75874.0 47 94717.0 48 113560.0 49 148668.0 50 183776.0 51 204000.0 52 224224.0 53 214384.5 54 204545.0 55 186667.5 56 168790.0 57 152429.5 58 136069.0 59 126861.0 60 117653.0 61 115087.0 62 112521.0 63 109425.0 64 90912.5 65 75496.0 66 63193.5 67 50891.0 68 41452.0 69 32013.0 70 28288.0 71 24563.0 72 23585.5 73 22608.0 74 18295.0 75 13982.0 76 10655.0 77 7328.0 78 5629.5 79 3931.0 80 2971.0 81 2011.0 82 1511.5 83 1012.0 84 769.5 85 527.0 86 396.5 87 266.0 88 163.0 89 48.5 90 37.0 91 25.0 92 13.0 93 10.5 94 8.0 95 5.0 96 2.0 97 1.5 98 1.0 99 1.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2185999.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.96598348480951 #Duplication Level Percentage of deduplicated Percentage of total 1 74.80641979996791 22.416479402835655 2 9.92409033955714 5.947702544338536 3 3.5553719394376495 3.1962065045863124 4 1.837072902403599 2.2019878501526926 5 1.113304390206541 1.6680630485247563 6 0.8544426539515676 1.536252867421769 7 0.6629424829088442 1.3906006445957524 8 0.565337511722367 1.3552715631692602 9 0.5038567709860561 1.358870731026984 >10 5.736053097932955 35.65883660146678 >50 0.29494741787143003 5.908370256333878 >100 0.13481174603838417 6.940774939975112 >500 0.006441294252082859 1.3495754796833563 >1k 0.004140832019196123 2.598872620584819 >5k 4.6009244657734704E-4 1.0191441067036064 >10k+ 3.0672829771823134E-4 5.452990838600727 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 105701 4.835363602636598 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 12953 0.59254372943446 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 8840 0.4043917677912936 No Hit CCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGCT 7219 0.33023802847119327 No Hit CTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGCTT 6117 0.2798262945225501 Illumina Single End Adapter 2 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGC 4615 0.21111629053810183 No Hit GCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGCT 3725 0.17040263970843536 No Hit CGTTCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCT 3469 0.15869174688552007 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 3168 0.1449222986835767 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 3042 0.1391583436222981 No Hit CGTTTCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTC 2995 0.137008296893091 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCG 2711 0.12401652516766933 No Hit GGGCCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCT 2407 0.11010983994045744 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 2350 0.1075023364603552 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA 2285 0.10452886757953686 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTT 2215 0.10132667032327096 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.574567508951285E-5 0.0 0.0 0.2887467011650051 0.0 2 4.574567508951285E-5 0.0 0.0 0.9354990555805378 0.0 3 4.574567508951285E-5 0.0 0.0 1.5835322888985768 0.0 4 4.574567508951285E-5 0.0 0.0 2.039296449815393 0.0 5 4.574567508951285E-5 0.0 0.0 4.217934225953443 0.0 6 4.574567508951285E-5 0.0 0.0 5.10745887806902 0.0 7 4.574567508951285E-5 0.0 0.0 7.530561541885426 0.0 8 4.574567508951285E-5 0.0 0.0 10.427543653954096 0.0 9 4.574567508951285E-5 0.0 0.0 13.262311647901027 0.0 10 4.574567508951285E-5 0.0 0.0 14.794563035024261 0.0 11 4.574567508951285E-5 0.0 0.0 15.980885627120598 0.0 12 9.14913501790257E-5 0.0 0.0 16.790492584854796 0.0 13 9.14913501790257E-5 0.0 0.0 17.237336339129158 0.0 14 9.14913501790257E-5 0.0 0.0 17.52567132921836 0.0 15 9.14913501790257E-5 0.0 0.0 18.20517758699798 0.0 16 9.14913501790257E-5 0.0 0.0 18.930612502567477 0.0 17 9.14913501790257E-5 0.0 0.0 19.8373832741918 0.0 18 9.14913501790257E-5 0.0 0.0 20.377136494572962 0.0 19 9.14913501790257E-5 0.0 0.0 20.97183027073663 0.0 20 9.14913501790257E-5 0.0 0.0 21.62274548158531 0.0 21 9.14913501790257E-5 0.0 0.0 22.290678083567283 0.0 22 1.3723702526853855E-4 0.0 0.0 22.914145889362256 0.0 23 1.3723702526853855E-4 0.0 0.0 23.476451727562548 0.0 24 1.829827003580514E-4 0.0 0.0 23.933816987107498 0.0 25 1.829827003580514E-4 0.0 0.0 24.39927923114329 0.0 26 1.829827003580514E-4 0.0 0.0 24.85646150798788 0.0 27 1.829827003580514E-4 0.0 0.0 25.328602620586743 0.0 28 1.829827003580514E-4 0.0 0.0 25.78628809985732 0.0 29 1.829827003580514E-4 0.0 0.0 26.271009273105797 0.0 30 1.829827003580514E-4 0.0 0.0 26.713324205546296 0.0 31 1.829827003580514E-4 0.0 0.0 27.17709385960378 0.0 32 1.829827003580514E-4 0.0 0.0 27.69992118020182 0.0 33 1.829827003580514E-4 0.0 0.0 28.212044012828915 0.0 34 1.829827003580514E-4 0.0 0.0 28.744523670870848 0.0 35 1.829827003580514E-4 0.0 0.0 29.217305222920963 0.0 36 1.829827003580514E-4 0.0 0.0 29.71808312812586 0.0 37 1.829827003580514E-4 0.0 0.0 30.36039815205771 0.0 38 1.829827003580514E-4 0.0 0.0 31.031395714270683 0.0 39 1.829827003580514E-4 0.0 0.0 31.788349399976852 0.0 40 1.829827003580514E-4 0.0 0.0 32.45605327358338 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATACGTT 20 6.3127093E-4 46.000004 32 TACGTTA 20 6.3127093E-4 46.000004 35 TACCGGA 20 6.3127093E-4 46.000004 34 AAGTCGA 20 6.3127093E-4 46.000004 27 CGTTTTT 26490 0.0 45.296715 1 TATACGG 90 0.0 43.444447 1 AATGCGG 265 0.0 41.660378 1 CACTTAC 3085 0.0 41.45219 36 ACTTACT 3070 0.0 41.429966 37 ATAGCGG 285 0.0 41.157898 1 CATGCGG 305 0.0 40.72131 1 TAGCATA 1175 0.0 40.714893 29 TAAACGG 85 0.0 40.588234 1 GTTTTTT 30095 0.0 40.51271 2 GGCGATA 335 0.0 40.50746 7 GCACTTA 3165 0.0 40.477093 35 CGCACTT 3175 0.0 40.349606 34 ACAACGG 200 0.0 40.25 1 TACGCGG 200 0.0 40.25 1 ACCCGCA 3190 0.0 40.231976 31 >>END_MODULE