SRR1043295_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043295_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2136694
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	100566	4.706616857631463	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	12377	0.5792593604886802	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	7361	0.3445041732695463	No Hit
CCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGC	6901	0.3229755875197853	No Hit
CTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGCT	5865	0.27448946830945375	No Hit
CGCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTG	4568	0.2137882167498013	No Hit
GCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGC	3722	0.17419433947958857	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTC	3182	0.14892165186030382	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3009	0.1408250315674589	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2876	0.13460046220937577	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTT	2745	0.1284694953980308	No Hit
GGGCCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTC	2431	0.11377389556015041	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCC	2419	0.11321228027972184	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	2172	0.10165236575756754	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCT	2159	0.10104394920376994	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	25305	44.377594	1
CTAGCGG	565	42.610622	1
TAGTAGG	495	41.363636	1
CATGCGG	355	41.197186	1
CACTTAC	3420	41.18421	36
CCGGTAT	105	40.714287	42
TCGATTA	155	40.645164	40
ACTTACT	3445	40.624092	37
CGCACTT	3510	40.576923	34
CTTACGG	200	40.5	1
GCACTTA	3495	40.49356	35
CCAGTAG	1090	40.458714	25
CCGCACT	3530	40.347027	33
ACCCGCA	3565	40.26648	31
CCCGCAC	3595	40.243393	32
TGTACGG	235	40.212765	1
TACGGGT	140	40.17857	3
AATGCGG	280	40.17857	1
TAGCATA	1045	40.047848	29
AGGGCGA	815	40.030674	5