FastQCFastQC Report
Thu 26 May 2016
SRR1043294_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1043294_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences2613965
Sequences flagged as poor quality0
Sequence length52
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1290704.937709571474752No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC136900.5237254515649598No Hit
CCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCT110200.42158177328311586TruSeq Adapter, Index 15 (95% over 22bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA93900.35922439665412503No Hit
CTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCTT88800.3397138064205144TruSeq Adapter, Index 21 (95% over 24bp)
CGCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC64920.2483583368560788TruSeq Adapter, Index 21 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCT51530.1971334734780305TruSeq Adapter, Index 15 (95% over 22bp)
CGTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCT49930.1910125039929762No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTC44720.17108109710726807No Hit
GGGCCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCT42130.1611727777533364No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCG37730.14434011166943705No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTT35650.13638285133886643No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC33890.1296497849053067No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC32100.12280195029390217No Hit
CGTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTG28700.10979489013816177TruSeq Adapter, Index 21 (95% over 21bp)
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA26140.10000133896207486No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTTTT330500.045.2971271
TCACGAC4450.042.89887624
CTAGCGG5150.041.9805871
GCATAGG4500.041.41
ACCCGCA37150.041.2328431
CCGCACT36950.041.08254233
GTTTTTT371250.041.043772
CACTTAC37000.040.90270236
CCCGCAC37600.040.80053332
CGCACTT37250.040.7516834
CCGGTAT1700.040.58823442
TACCGGT1700.040.58823440
GCACTTA37350.040.51941335
TAGGGTA7550.040.5165564
AACCCGA1250.040.4823
CACGACG4550.040.43955625
ACGTAGG1650.040.424241
TACGCGG2450.040.3673481
ATTGCGG5700.040.350881
ACTTACT37150.040.2422637