SRR1043294_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043294_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2613965
Sequences flagged as poor quality	0
Sequence length	52
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	129070	4.937709571474752	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	13690	0.5237254515649598	No Hit
CCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCT	11020	0.42158177328311586	TruSeq Adapter, Index 15 (95% over 22bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	9390	0.35922439665412503	No Hit
CTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCTT	8880	0.3397138064205144	TruSeq Adapter, Index 21 (95% over 24bp)
CGCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC	6492	0.2483583368560788	TruSeq Adapter, Index 21 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCT	5153	0.1971334734780305	TruSeq Adapter, Index 15 (95% over 22bp)
CGTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCT	4993	0.1910125039929762	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTC	4472	0.17108109710726807	No Hit
GGGCCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCT	4213	0.1611727777533364	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCG	3773	0.14434011166943705	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTT	3565	0.13638285133886643	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3389	0.1296497849053067	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3210	0.12280195029390217	No Hit
CGTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTG	2870	0.10979489013816177	TruSeq Adapter, Index 21 (95% over 21bp)
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA	2614	0.10000133896207486	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	33050	45.297127	1
TCACGAC	445	42.898876	24
CTAGCGG	515	41.980587	1
GCATAGG	450	41.4	1
ACCCGCA	3715	41.23284	31
CCGCACT	3695	41.082542	33
GTTTTTT	37125	41.04377	2
CACTTAC	3700	40.902702	36
CCCGCAC	3760	40.800533	32
CGCACTT	3725	40.75168	34
CCGGTAT	170	40.588234	42
TACCGGT	170	40.588234	40
GCACTTA	3735	40.519413	35
TAGGGTA	755	40.516556	4
AACCCGA	125	40.48	23
CACGACG	455	40.439556	25
ACGTAGG	165	40.42424	1
TACGCGG	245	40.367348	1
ATTGCGG	570	40.35088	1
ACTTACT	3715	40.24226	37