##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043294_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2613965 Sequences flagged as poor quality 0 Sequence length 52 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.411159675053035 33.0 31.0 34.0 31.0 34.0 2 32.73598919648886 34.0 31.0 34.0 31.0 34.0 3 32.835963373648845 34.0 31.0 34.0 31.0 34.0 4 36.26666539146469 37.0 37.0 37.0 35.0 37.0 5 36.19720730767244 37.0 37.0 37.0 35.0 37.0 6 36.35776951871965 37.0 37.0 37.0 35.0 37.0 7 36.29798562719853 37.0 37.0 37.0 35.0 37.0 8 36.28303056850417 37.0 37.0 37.0 35.0 37.0 9 37.91005350109891 39.0 38.0 39.0 35.0 39.0 10 37.708387832277786 39.0 37.0 39.0 35.0 39.0 11 37.33195356479524 39.0 37.0 39.0 35.0 39.0 12 37.3257415458891 39.0 37.0 39.0 35.0 39.0 13 37.3021781087352 39.0 37.0 39.0 35.0 39.0 14 38.622375203952615 40.0 38.0 41.0 35.0 41.0 15 38.682617020503336 41.0 38.0 41.0 35.0 41.0 16 38.5742050869082 41.0 38.0 41.0 34.0 41.0 17 38.53835609887661 40.0 38.0 41.0 34.0 41.0 18 38.302081320905216 40.0 37.0 41.0 34.0 41.0 19 38.0780236154654 40.0 37.0 41.0 34.0 41.0 20 37.782107641074 40.0 35.0 41.0 34.0 41.0 21 37.70902403054364 39.0 35.0 41.0 34.0 41.0 22 37.65388404205871 39.0 35.0 41.0 34.0 41.0 23 37.67762728269124 39.0 35.0 41.0 34.0 41.0 24 37.604825236757186 39.0 35.0 41.0 34.0 41.0 25 37.50266319556689 39.0 35.0 41.0 34.0 41.0 26 37.411819209515045 39.0 35.0 41.0 34.0 41.0 27 37.46079576428912 39.0 35.0 41.0 34.0 41.0 28 37.441243092390295 39.0 35.0 41.0 34.0 41.0 29 37.34309028621271 39.0 35.0 41.0 33.0 41.0 30 37.26559498692599 39.0 35.0 41.0 33.0 41.0 31 37.13249221010993 39.0 35.0 41.0 33.0 41.0 32 36.87750218537739 39.0 35.0 41.0 33.0 41.0 33 36.44759780639756 39.0 35.0 41.0 31.0 41.0 34 36.18576912850784 39.0 35.0 41.0 30.0 41.0 35 36.004792719106796 39.0 35.0 41.0 30.0 41.0 36 35.94473453164063 39.0 35.0 41.0 30.0 41.0 37 35.840291664195966 38.0 35.0 41.0 30.0 41.0 38 35.72970602131245 38.0 35.0 41.0 29.0 41.0 39 35.70503277587879 38.0 35.0 41.0 29.0 41.0 40 35.651808268282096 38.0 35.0 41.0 29.0 41.0 41 35.61376606037189 38.0 35.0 41.0 29.0 41.0 42 35.53078025145708 38.0 35.0 41.0 29.0 41.0 43 35.41895625993462 38.0 35.0 41.0 29.0 41.0 44 35.23915851972004 37.0 35.0 40.0 27.0 41.0 45 35.14884284984688 37.0 35.0 40.0 27.0 41.0 46 35.126518909013704 37.0 35.0 40.0 26.0 41.0 47 35.052644928298584 37.0 35.0 40.0 26.0 41.0 48 34.96590543484706 36.0 35.0 40.0 26.0 41.0 49 34.918518419336145 36.0 35.0 40.0 27.0 41.0 50 34.82042835309578 36.0 35.0 40.0 27.0 41.0 51 34.69567419609673 36.0 35.0 40.0 26.0 41.0 52 34.35090217351801 35.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 2.0 11 3.0 12 2.0 13 3.0 14 15.0 15 50.0 16 96.0 17 209.0 18 428.0 19 941.0 20 1661.0 21 2801.0 22 4546.0 23 7413.0 24 12935.0 25 23759.0 26 35898.0 27 44843.0 28 47588.0 29 46273.0 30 47570.0 31 52237.0 32 60932.0 33 79994.0 34 192861.0 35 251115.0 36 245486.0 37 236959.0 38 349735.0 39 864481.0 40 3128.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.49980776330211 16.322674557616494 23.046789073304346 32.13072860577705 2 36.397962482282665 18.67358591258873 23.41358816969623 21.51486343543238 3 25.538367958254987 20.17861754078574 35.10242103471163 19.180593466247636 4 23.354520814165454 22.493529943974 32.93345549768264 21.218493744177906 5 21.422819356800876 30.24956340272345 30.115858475534296 18.211758764941383 6 76.22883244419876 1.9372485859604087 18.67262951110669 3.161289458734146 7 75.72136581782847 1.74761330010157 17.396598653769274 5.134422228300685 8 66.43952769069212 3.1854672882001096 22.84567696966103 7.529328051446749 9 41.83755329547259 13.823138412335284 26.808430870344473 17.530877421847652 10 29.17957968067667 14.579422448273025 36.51449043885439 19.726507432195916 11 26.092430464830247 11.941246344155335 40.18588619204924 21.780436998965175 12 21.080924955001308 12.66080456318275 43.1717716189773 23.08649886283864 13 16.543182483315576 15.378247222131897 45.60198778484027 22.476582509712255 14 17.187070217084006 15.853310966290673 44.87416625700803 22.085452559617284 15 20.96753399529068 13.77348204738778 43.81355526948524 21.445428687836294 16 20.100957740444116 18.042246166264658 40.42253817476515 21.43425791852607 17 20.385200260906323 19.307450558825387 40.2136218350284 20.093727345239895 18 20.1107512916202 25.166136501445123 36.38323389945925 18.339878307475423 19 21.842832631653447 21.682386719026457 34.38324537627703 22.091535273043057 20 20.953226229119366 25.715378744550904 34.53967440267945 18.791720623650278 21 19.034761368266217 19.971231443420244 36.56758984913723 24.42641733917631 22 20.271885813314256 21.75078855302194 34.049384746926606 23.927940886737197 23 21.394203824458245 19.29429047443252 36.69012400701616 22.621381694093074 24 23.287687478600517 17.663511179376922 34.20305933706075 24.84574200496181 25 18.499673867094625 18.040027314826325 38.07828337410792 25.382015443971135 26 17.653985420615808 17.90796739818628 37.70647273395015 26.731574447247763 27 21.216351404858138 20.755557170811393 36.45278341523318 21.57530800909729 28 22.74770320184088 21.852932231303786 32.82603248321993 22.573332083635396 29 22.00633902902296 19.424361075989925 36.782741926536886 21.78655796845023 30 25.930760358306248 20.10271751917107 31.81626379848238 22.150258324040298 31 26.450889740298745 18.279510245929075 33.82237329114965 21.447226722622528 32 23.710149141247108 22.21915748680644 32.31848934473109 21.75220402721536 33 20.998177098775233 21.827185903407276 37.493348227692415 19.68128877012508 34 21.488275474231674 25.204430816785994 34.18691528004392 19.120378428938416 35 22.823182406803458 28.25121989009034 31.553482927277145 17.372114775829058 36 26.567762001404 24.85392880164807 28.284349637428196 20.293959559519735 37 25.940974726134435 27.250288355046838 28.760369783069017 18.048367135749714 38 24.086282716103696 23.45306842287483 27.854619323518104 24.60602953750337 39 23.603338223732912 20.852612793208785 32.01075760386998 23.53329137918832 40 19.87627990428334 19.9436870807375 34.39847128787111 25.781561727108055 41 20.580344419301714 22.42199111311743 30.903588992201502 26.09407547537936 42 20.052487313334343 18.843213279443297 33.2921825655661 27.81211684165626 43 22.550569728362852 19.422869089677942 34.04490878799066 23.98165239396855 44 22.00565041995589 20.59832476716406 34.51163271122605 22.884392101654 45 22.642384270638665 21.535445195325874 33.26479122712049 22.557379306914974 46 23.066337919597242 19.86357889260185 32.947112910846165 24.122970276954742 47 20.70880826636929 20.59193600526403 34.37574718865785 24.323508539708833 48 22.23908889369215 18.659698963069513 31.337910033225384 27.76330211001295 49 21.571138098635597 17.17023755100011 35.91008295826455 25.348541392099744 50 20.945345480907356 17.149655791106614 36.96893416706038 24.936064560925644 51 19.105726358233564 16.206949978289686 36.538630012261066 28.148693651215684 52 17.028919668013916 17.06002184420985 40.37066295837932 25.540395529396914 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 498.0 1 3660.0 2 6822.0 3 92129.5 4 177437.0 5 100918.5 6 24400.0 7 22120.0 8 19840.0 9 19269.5 10 18699.0 11 18024.5 12 17350.0 13 16475.5 14 14489.0 15 13377.0 16 12428.5 17 11480.0 18 10871.5 19 10263.0 20 9760.0 21 9257.0 22 8981.0 23 8705.0 24 8439.0 25 8173.0 26 9006.5 27 9840.0 28 9988.5 29 10137.0 30 11163.0 31 12189.0 32 13317.5 33 14446.0 34 17346.0 35 20246.0 36 22902.5 37 25559.0 38 27875.0 39 35784.5 40 41378.0 41 52841.0 42 64304.0 43 91154.0 44 118004.0 45 160452.0 46 202900.0 47 228071.0 48 253242.0 49 248643.5 50 244045.0 51 221122.0 52 198199.0 53 171223.5 54 144248.0 55 135450.5 56 126653.0 57 124935.5 58 123218.0 59 122393.5 60 121569.0 61 121433.0 62 121297.0 63 120590.0 64 104529.0 65 89175.0 66 73866.0 67 58557.0 68 47782.5 69 37008.0 70 32321.5 71 27635.0 72 26398.5 73 25162.0 74 20334.5 75 15507.0 76 11978.0 77 8449.0 78 6426.5 79 4404.0 80 3394.0 81 2384.0 82 1839.0 83 1294.0 84 924.5 85 555.0 86 380.5 87 206.0 88 155.5 89 70.0 90 35.0 91 26.5 92 18.0 93 13.5 94 9.0 95 9.5 96 10.0 97 6.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2613965.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.28120790036106 #Duplication Level Percentage of deduplicated Percentage of total 1 73.6447140918347 21.564061840856617 2 10.224151914999581 5.9875103565595476 3 3.785341615230167 3.325181244283292 4 1.9517815217235759 2.286020820546844 5 1.290064350731572 1.8887321229307739 6 0.9593302677567153 1.6854209409176055 7 0.7456572573479986 1.5283621622373849 8 0.651309622774018 1.5256905977561408 9 0.5556721654677468 1.4643676981354437 >10 5.753780512297785 33.16541974280883 >50 0.2547352912887146 5.13896066422356 >100 0.17075230963947027 9.195590575259644 >500 0.006813114466178258 1.3325580278534415 >1k 0.004978814417591804 2.8647273708137364 >5k 5.240857281675582E-4 1.1476787413841107 >10k+ 3.930642961256687E-4 5.899717093433012 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 129070 4.937709571474752 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 13690 0.5237254515649598 No Hit CCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCT 11020 0.42158177328311586 TruSeq Adapter, Index 15 (95% over 22bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 9390 0.35922439665412503 No Hit CTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCTT 8880 0.3397138064205144 TruSeq Adapter, Index 21 (95% over 24bp) CGCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC 6492 0.2483583368560788 TruSeq Adapter, Index 21 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCT 5153 0.1971334734780305 TruSeq Adapter, Index 15 (95% over 22bp) CGTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCT 4993 0.1910125039929762 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTC 4472 0.17108109710726807 No Hit GGGCCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCT 4213 0.1611727777533364 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCG 3773 0.14434011166943705 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTT 3565 0.13638285133886643 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 3389 0.1296497849053067 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 3210 0.12280195029390217 No Hit CGTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTG 2870 0.10979489013816177 TruSeq Adapter, Index 21 (95% over 21bp) CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA 2614 0.10000133896207486 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.34801537128461935 0.0 2 3.8256059281589465E-5 0.0 0.0 1.1029221890882241 0.0 3 3.8256059281589465E-5 0.0 0.0 1.7790597808310364 0.0 4 3.8256059281589465E-5 0.0 0.0 2.265141270062912 0.0 5 3.8256059281589465E-5 0.0 0.0 4.650674358684986 0.0 6 3.8256059281589465E-5 0.0 0.0 5.7735662107182 0.0 7 3.8256059281589465E-5 0.0 0.0 8.764960510182807 0.0 8 3.8256059281589465E-5 0.0 0.0 12.29947608326814 0.0 9 3.8256059281589465E-5 0.0 0.0 15.73096808870815 0.0 10 3.8256059281589465E-5 0.0 0.0 17.57491014608076 0.0 11 3.8256059281589465E-5 0.0 0.0 18.93762923375026 0.0 12 3.8256059281589465E-5 0.0 0.0 19.8680548515378 0.0 13 7.651211856317893E-5 0.0 0.0 20.388796330478794 0.0 14 7.651211856317893E-5 0.0 0.0 20.699282507608174 0.0 15 7.651211856317893E-5 0.0 0.0 21.3733160160905 0.0 16 7.651211856317893E-5 0.0 0.0 22.081282649155593 0.0 17 7.651211856317893E-5 0.0 0.0 22.99215942065024 0.0 18 7.651211856317893E-5 0.0 0.0 23.536543144227256 0.0 19 7.651211856317893E-5 0.0 0.0 24.155028854632715 0.0 20 7.651211856317893E-5 0.0 0.0 24.84497688377618 0.0 21 7.651211856317893E-5 0.0 0.0 25.536646435587315 0.0 22 1.147681778447684E-4 0.0 0.0 26.185469201003073 0.0 23 1.5302423712635786E-4 0.0 0.0 26.765431059711972 0.0 24 1.912802964079473E-4 0.0 0.0 27.242025046242013 0.0 25 2.295363556895368E-4 0.0 0.0 27.70021786825761 0.0 26 2.295363556895368E-4 0.0 0.0 28.151256807187547 0.0 27 2.295363556895368E-4 0.0 0.0 28.63913633120566 0.0 28 2.295363556895368E-4 0.0 0.0 29.10394745147697 0.0 29 2.295363556895368E-4 0.0 0.0 29.598177481335824 0.0 30 2.295363556895368E-4 0.0 0.0 30.056982400299926 0.0 31 2.295363556895368E-4 0.0 0.0 30.534035459541347 0.0 32 2.6779241497112624E-4 0.0 0.0 31.062772454872196 0.0 33 2.6779241497112624E-4 0.0 0.0 31.572649212977222 0.0 34 3.060484742527157E-4 0.0 0.0 32.108807883808694 0.0 35 3.060484742527157E-4 0.0 0.0 32.61386437844424 0.0 36 3.4430453353430514E-4 0.0 0.0 33.13605958763794 0.0 37 3.4430453353430514E-4 0.0 0.0 33.82003967153347 0.0 38 3.4430453353430514E-4 0.0 0.0 34.503101610006254 0.0 39 3.4430453353430514E-4 0.0 0.0 35.25862052475836 0.0 40 3.4430453353430514E-4 0.0 0.0 35.90912655678251 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 33050 0.0 45.297127 1 TCACGAC 445 0.0 42.898876 24 CTAGCGG 515 0.0 41.980587 1 GCATAGG 450 0.0 41.4 1 ACCCGCA 3715 0.0 41.23284 31 CCGCACT 3695 0.0 41.082542 33 GTTTTTT 37125 0.0 41.04377 2 CACTTAC 3700 0.0 40.902702 36 CCCGCAC 3760 0.0 40.800533 32 CGCACTT 3725 0.0 40.75168 34 CCGGTAT 170 0.0 40.588234 42 TACCGGT 170 0.0 40.588234 40 GCACTTA 3735 0.0 40.519413 35 TAGGGTA 755 0.0 40.516556 4 AACCCGA 125 0.0 40.48 23 CACGACG 455 0.0 40.439556 25 ACGTAGG 165 0.0 40.42424 1 TACGCGG 245 0.0 40.367348 1 ATTGCGG 570 0.0 40.35088 1 ACTTACT 3715 0.0 40.24226 37 >>END_MODULE