SRR1043293_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043293_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2590715
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	123925	4.783428512978078	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	13066	0.5043395356108256	No Hit
CCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC	10924	0.4216596576620739	TruSeq Adapter, Index 15 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCT	8739	0.3373200062531	TruSeq Adapter, Index 21 (95% over 23bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	7989	0.3083704691561982	No Hit
CGCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTG	6386	0.24649565853442004	TruSeq Adapter, Index 21 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC	5129	0.19797623436001258	TruSeq Adapter, Index 15 (95% over 21bp)
CGTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTC	5001	0.19303551336214134	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTT	4355	0.16810031207600992	No Hit
GGGCCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTC	4308	0.16628614108460407	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCC	3566	0.13764539905006917	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCT	3398	0.13116070274036318	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3248	0.1253707953209828	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3184	0.12290043482204718	No Hit
CGTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCT	2852	0.11008543973381865	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	31835	44.300297	1
ACCGGTA	155	43.548386	41
TCACGAC	350	43.071426	24
TCGACGG	185	41.351353	1
CCGGTAT	160	40.781254	42
CACTTAC	3295	40.56146	36
CGTAAGG	100	40.5	1
CATGCGG	395	40.44304	1
CGCACTT	3320	40.256023	34
GCACTTA	3340	40.01497	35
CGACGGT	360	40.0	27
ACCCGCA	3430	39.94898	31
GTTTTTT	35980	39.934685	2
ACACGAC	215	39.767445	25
CCGCACT	3365	39.650818	33
CCCGCAC	3470	39.55331	32
CTAGCGG	660	39.545452	1
ACTTACT	3335	39.467766	37
GGCGATA	475	39.315792	7
TACGGGA	350	39.214287	3