##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043293_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2590715 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.3820427951357 33.0 31.0 34.0 31.0 34.0 2 32.66944607955719 34.0 31.0 34.0 31.0 34.0 3 32.74976753521711 34.0 31.0 34.0 31.0 34.0 4 36.23675742024885 37.0 37.0 37.0 35.0 37.0 5 36.212645929791584 37.0 37.0 37.0 35.0 37.0 6 36.373739295908656 37.0 37.0 37.0 35.0 37.0 7 36.32676384704609 37.0 37.0 37.0 35.0 37.0 8 36.23725187834246 37.0 37.0 37.0 35.0 37.0 9 37.87033000542321 39.0 38.0 39.0 35.0 39.0 10 37.65756325956348 39.0 37.0 39.0 35.0 39.0 11 37.32789558094966 39.0 37.0 39.0 35.0 39.0 12 37.32741733459682 39.0 37.0 39.0 35.0 39.0 13 37.317108597433524 39.0 37.0 39.0 35.0 39.0 14 38.63554848757968 40.0 38.0 41.0 35.0 41.0 15 38.702630354940624 40.0 38.0 41.0 35.0 41.0 16 38.634530621855355 41.0 38.0 41.0 34.0 41.0 17 38.5723165226588 40.0 38.0 41.0 34.0 41.0 18 38.35890439511872 40.0 37.0 41.0 34.0 41.0 19 38.155949226371874 40.0 37.0 41.0 34.0 41.0 20 37.87656148978178 40.0 35.0 41.0 34.0 41.0 21 37.80619404295725 40.0 35.0 41.0 34.0 41.0 22 37.76527676722449 40.0 35.0 41.0 34.0 41.0 23 37.75352132519401 39.0 35.0 41.0 34.0 41.0 24 37.68741795218695 39.0 35.0 41.0 34.0 41.0 25 37.6491929834042 39.0 35.0 41.0 34.0 41.0 26 37.626174241473876 39.0 35.0 41.0 34.0 41.0 27 37.61753724357948 39.0 35.0 41.0 34.0 41.0 28 37.534095027820506 39.0 35.0 41.0 34.0 41.0 29 37.47157213356159 39.0 35.0 41.0 34.0 41.0 30 37.35742835472061 39.0 35.0 41.0 34.0 41.0 31 37.22002458780684 39.0 35.0 41.0 33.0 41.0 32 36.97268939269661 39.0 35.0 41.0 33.0 41.0 33 36.54040602690763 39.0 35.0 41.0 31.0 41.0 34 36.232479450653585 39.0 35.0 41.0 31.0 41.0 35 36.05296028316507 39.0 35.0 41.0 30.0 41.0 36 35.97435804401488 39.0 35.0 41.0 30.0 41.0 37 35.81943324526241 38.0 35.0 41.0 30.0 41.0 38 35.707906118581164 38.0 35.0 41.0 29.0 41.0 39 35.641619784499646 38.0 35.0 41.0 29.0 41.0 40 35.56801886737831 38.0 35.0 41.0 29.0 41.0 41 35.49380267609521 38.0 35.0 40.0 29.0 41.0 42 35.401063027002195 38.0 35.0 40.0 29.0 41.0 43 35.28289217455413 37.0 35.0 40.0 28.0 41.0 44 35.165587492256 37.0 35.0 40.0 27.0 41.0 45 35.10541105447724 37.0 35.0 40.0 27.0 41.0 46 35.0304170856308 37.0 35.0 40.0 26.0 41.0 47 34.89978519443474 36.0 35.0 40.0 26.0 41.0 48 34.84157809716623 36.0 35.0 40.0 26.0 41.0 49 34.77414034349591 36.0 35.0 40.0 26.0 41.0 50 34.70466261244483 36.0 35.0 40.0 26.0 41.0 51 34.291136616725495 35.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 1.0 10 0.0 11 0.0 12 1.0 13 4.0 14 19.0 15 38.0 16 83.0 17 143.0 18 428.0 19 826.0 20 1540.0 21 2663.0 22 4057.0 23 6422.0 24 11122.0 25 19974.0 26 33106.0 27 43651.0 28 47157.0 29 46754.0 30 47277.0 31 52205.0 32 59756.0 33 78725.0 34 188363.0 35 254145.0 36 237030.0 37 236802.0 38 367193.0 39 850928.0 40 301.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.829068423195913 16.337072970203206 23.195334106607636 31.638524499993242 2 36.113196549987165 18.759879029534318 23.453872772574368 21.673051647904153 3 25.61150107209786 20.275792590076485 34.76179355892099 19.350912778904668 4 23.479695759664803 22.68427827839033 32.48994968570453 21.346076276240343 5 21.6333328830072 30.26554445394418 29.8140474733809 18.287075189667718 6 76.56341975091819 1.9229440521246064 18.341307322495915 3.172328874461297 7 76.06487012272673 1.7197569010871514 17.033251438309502 5.1821215378766095 8 66.66287106069174 3.130757339190146 22.56512198369948 7.6412496164186345 9 41.99099476399372 13.72902847283472 26.474004280671554 17.805972482500003 10 29.42635527257919 14.5944652345009 36.245283637914625 19.73389585500528 11 26.383488728015237 11.913467903648222 39.85864906020153 21.844394308135012 12 21.22016508956022 12.621071789062094 43.00403556547131 23.154727555906383 13 16.515903910696466 15.390654703431291 45.50342280026942 22.590018585602817 14 17.25087475851261 15.815132116037464 44.72641722458858 22.207575900861347 15 21.023771429894836 13.76546629019402 43.6647026014054 21.546059678505742 16 20.20612070412994 18.02046925269665 40.32346282782938 21.449947215344025 17 20.455125322546092 19.275991376897885 40.08985936314878 20.17902393740724 18 20.159801444774896 25.357439934535446 36.21212676809298 18.27063185259668 19 21.87376843844267 21.804945738917635 34.156902631126925 22.16438319151277 20 20.903418554337318 25.971015723458578 34.22977826584553 18.895787456358573 21 19.07662556475722 20.07438101064764 36.26825027067817 24.58074315391697 22 20.277568161685096 21.90704110641271 33.68220742150333 24.133183310398866 23 21.521047278454017 19.333427258498137 36.33819235230429 22.807333110743556 24 23.348149063096482 17.691795508189827 33.986138961638005 24.97391646707569 25 18.429584110950064 18.107935454112088 37.96245438035446 25.500026054583387 26 17.647599214888555 17.8060110818828 37.53990693688808 27.006482766340568 27 21.273779632263683 20.793371713986293 36.281644256508336 21.65120439724169 28 22.863997004687896 21.896889468737395 32.543873023470354 22.695240503104355 29 22.040440573355234 19.57046606824757 36.44434065499293 21.944752703404273 30 26.03331512729111 20.1560573046437 31.460812941601063 22.349814626464124 31 26.64372576682499 18.27063185259668 33.52526233105533 21.56038004952301 32 23.787294241165082 22.287360825100407 31.998618142095907 21.9267267916386 33 21.10652850660918 21.782558096896032 37.363391959362566 19.74752143713222 34 21.520043694501325 25.333045124608454 34.037823535201674 19.109087645688547 35 22.80930167926615 28.363173872849774 31.411367132239555 17.416157315644522 36 26.691511802726275 24.985534881297248 28.064646246306523 20.258307069669957 37 26.194004357870316 27.222291915552272 28.56558903623131 18.018114690346103 38 24.346174704666474 23.393619136030015 27.63202436393042 24.62818179537309 39 23.698129666906624 20.948734229739667 31.748301144664698 23.60483495868901 40 20.01709952657857 19.865982942932742 34.184694186739954 25.932223343748735 41 20.68892178414067 22.349390033253368 30.773859725982984 26.18782845662298 42 20.159299652798552 18.73123828749978 33.189177505051696 27.92028455464997 43 22.788110618111215 19.244610078684843 33.89855696207418 24.068722341129764 44 22.09378492037912 20.45917825773966 34.530699054122124 22.916337767759092 45 22.752406189025038 21.453189563498878 33.252248896540145 22.54215535093594 46 23.23628805175405 19.80893305516045 32.974989529917416 23.979789363168084 47 20.925188606234187 20.411739616283537 34.289182715968366 24.373889061513907 48 22.3584222888276 18.54812281551618 31.164717076173954 27.92873781948227 49 21.712886210949485 17.057491850705308 35.7661880986523 25.463433839692907 50 21.181256911701983 17.073008802589246 36.81856167119888 24.927172614509892 51 19.204235124280363 16.176538137155188 36.33958193008493 28.279644808479514 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 469.0 1 3388.5 2 6308.0 3 88218.5 4 170129.0 5 97714.0 6 25299.0 7 22482.5 8 19666.0 9 18951.5 10 18237.0 11 17503.0 12 16769.0 13 15923.0 14 15077.0 15 13934.5 16 12792.0 17 11823.0 18 10854.0 19 10262.5 20 9671.0 21 9241.0 22 8811.0 23 8491.0 24 8171.0 25 8005.0 26 8565.0 27 9291.0 28 9766.5 29 10242.0 30 11612.5 31 12983.0 32 14289.5 33 15596.0 34 19014.5 35 22433.0 36 24587.5 37 26742.0 38 30723.0 39 34704.0 40 42079.5 41 49455.0 42 61867.0 43 74279.0 44 109444.0 45 144609.0 46 188706.0 47 232803.0 48 261946.5 49 291090.0 50 261752.5 51 232415.0 52 197734.5 53 163054.0 54 145870.0 55 128686.0 56 126612.0 57 124538.0 58 124701.5 59 124865.0 60 123098.5 61 121332.0 62 119804.0 63 118276.0 64 114173.0 65 110070.0 66 90860.5 67 71651.0 68 58374.0 69 45097.0 70 38070.0 71 31043.0 72 28547.0 73 26051.0 74 22210.5 75 14332.0 76 10294.0 77 7692.5 78 5091.0 79 4006.0 80 2921.0 81 2195.0 82 1469.0 83 1054.0 84 639.0 85 480.0 86 321.0 87 234.0 88 147.0 89 89.5 90 32.0 91 24.0 92 16.0 93 13.5 94 11.0 95 9.0 96 7.0 97 3.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2590715.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.768565622347758 #Duplication Level Percentage of deduplicated Percentage of total 1 72.6615118291807 20.903674712767824 2 10.571180818120594 6.082354181436123 3 3.9364826831288577 3.3974088117248433 4 2.079460593375736 2.392923941584643 5 1.2934537240321469 1.8605404169644453 6 1.002468452913933 1.7303747683192747 7 0.8118806823437676 1.6349649881266206 8 0.7024664880321502 1.6167162606762462 9 0.5981001698957957 1.5485835587746086 >10 5.8873443268454 32.98391180401719 >50 0.2633243514136286 5.209410452308897 >100 0.17935284795157475 9.560932445678635 >500 0.006621652140848958 1.2704490392527752 >1k 0.005270294561083864 2.7649051584092956 >5k 6.756787898825467E-4 1.292414329107967 >10k+ 4.0540727392952803E-4 5.750435130850829 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 123925 4.783428512978078 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 13066 0.5043395356108256 No Hit CCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC 10924 0.4216596576620739 TruSeq Adapter, Index 15 (95% over 21bp) CTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCT 8739 0.3373200062531 TruSeq Adapter, Index 21 (95% over 23bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 7989 0.3083704691561982 No Hit CGCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTG 6386 0.24649565853442004 TruSeq Adapter, Index 21 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC 5129 0.19797623436001258 TruSeq Adapter, Index 15 (95% over 21bp) CGTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTC 5001 0.19303551336214134 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTT 4355 0.16810031207600992 No Hit GGGCCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTC 4308 0.16628614108460407 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCC 3566 0.13764539905006917 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCT 3398 0.13116070274036318 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3248 0.1253707953209828 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3184 0.12290043482204718 No Hit CGTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCT 2852 0.11008543973381865 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3460820661477623 0.0 2 0.0 0.0 0.0 1.1095006590844612 0.0 3 0.0 0.0 0.0 1.7973416605068484 0.0 4 0.0 0.0 0.0 2.2934981269649497 0.0 5 0.0 0.0 0.0 4.730547358547737 0.0 6 0.0 0.0 0.0 5.86320764730972 0.0 7 0.0 0.0 0.0 8.914450257940375 0.0 8 0.0 0.0 0.0 12.560509357455373 0.0 9 0.0 0.0 0.0 16.157971834030374 0.0 10 0.0 0.0 0.0 18.076515556516252 0.0 11 0.0 0.0 0.0 19.471072657548206 0.0 12 0.0 0.0 0.0 20.42999712434598 0.0 13 0.0 0.0 0.0 20.954369739627865 0.0 14 0.0 0.0 0.0 21.280264328573384 0.0 15 0.0 0.0 0.0 21.973239047907622 0.0 16 0.0 0.0 0.0 22.7069747154743 0.0 17 0.0 0.0 0.0 23.65053662791932 0.0 18 0.0 0.0 0.0 24.2188353408229 0.0 19 0.0 0.0 0.0 24.857384930414963 0.0 20 0.0 0.0 0.0 25.575140453504147 0.0 21 0.0 0.0 0.0 26.31246586367084 0.0 22 7.719876559173819E-5 0.0 0.0 26.987260273708223 0.0 23 7.719876559173819E-5 0.0 0.0 27.583968132349565 0.0 24 7.719876559173819E-5 0.0 0.0 28.058547543824773 0.0 25 7.719876559173819E-5 0.0 0.0 28.533281352831168 0.0 26 7.719876559173819E-5 0.0 0.0 28.99037524389985 0.0 27 7.719876559173819E-5 0.0 0.0 29.483019166523526 0.0 28 1.5439753118347637E-4 0.0 0.0 29.954240431695496 0.0 29 1.5439753118347637E-4 0.0 0.0 30.451825075317046 0.0 30 1.5439753118347637E-4 0.0 0.0 30.915944054054577 0.0 31 1.5439753118347637E-4 0.0 0.0 31.39442200319217 0.0 32 1.5439753118347637E-4 0.0 0.0 31.921843969714924 0.0 33 1.5439753118347637E-4 0.0 0.0 32.441623258444096 0.0 34 1.5439753118347637E-4 0.0 0.0 32.97969865461851 0.0 35 1.5439753118347637E-4 0.0 0.0 33.49137207296055 0.0 36 1.5439753118347637E-4 0.0 0.0 34.01532009503168 0.0 37 1.5439753118347637E-4 0.0 0.0 34.70404888225837 0.0 38 1.5439753118347637E-4 0.0 0.0 35.4064804503776 0.0 39 1.5439753118347637E-4 0.0 0.0 36.17491696307776 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 31835 0.0 44.300297 1 ACCGGTA 155 0.0 43.548386 41 TCACGAC 350 0.0 43.071426 24 TCGACGG 185 0.0 41.351353 1 CCGGTAT 160 0.0 40.781254 42 CACTTAC 3295 0.0 40.56146 36 CGTAAGG 100 0.0 40.5 1 CATGCGG 395 0.0 40.44304 1 CGCACTT 3320 0.0 40.256023 34 GCACTTA 3340 0.0 40.01497 35 CGACGGT 360 0.0 40.0 27 ACCCGCA 3430 0.0 39.94898 31 GTTTTTT 35980 0.0 39.934685 2 ACACGAC 215 0.0 39.767445 25 CCGCACT 3365 0.0 39.650818 33 CCCGCAC 3470 0.0 39.55331 32 CTAGCGG 660 0.0 39.545452 1 ACTTACT 3335 0.0 39.467766 37 GGCGATA 475 0.0 39.315792 7 TACGGGA 350 0.0 39.214287 3 >>END_MODULE