SRR1043292_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043292_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2806781
Sequences flagged as poor quality	0
Sequence length	52
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	107705	3.83731399065335	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	21495	0.7658239100236177	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	14803	0.5274013184498542	No Hit
CCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGCT	7858	0.2799648422873035	No Hit
CTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGCTT	6834	0.2434817679042291	Illumina Single End Adapter 1 (95% over 21bp)
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	5656	0.2015119811627626	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	5468	0.19481391672524503	No Hit
GCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGCT	4994	0.17792624362214224	No Hit
CGCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC	4479	0.15957782242362337	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3523	0.12551745219879998	No Hit
GGGCCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCT	2948	0.10503135086064783	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCT	2827	0.10072036257905409	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA	2817	0.10036408255578189	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	27455	0.0	45.229286	1
TCACGAC	610	0.0	43.360653	24
CACGACG	600	0.0	43.316666	25
GCGATCG	70	0.0	42.714283	8
CACTTAC	5495	0.0	42.274796	36
ACTTACT	5460	0.0	42.208794	37
CTTACTG	5470	0.0	42.047535	38
GCACTTA	5520	0.0	42.0	35
CGACGGT	610	0.0	41.85246	27
AATTCGG	55	4.7293724E-11	41.818184	1
CGCACTT	5560	0.0	41.69784	34
CCCGCAC	5630	0.0	41.628773	32
CCGCACT	5565	0.0	41.577717	33
TATTAGG	305	0.0	41.475407	1
ACCCGCA	5645	0.0	41.43667	31
AATGCGG	350	0.0	41.4	1
GACGGTC	640	0.0	41.328125	28
AGGGCGA	1325	0.0	41.13962	5
TAGTAGG	510	0.0	41.039215	1
GTTGATC	2320	0.0	40.84483	15