##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043292_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2806781 Sequences flagged as poor quality 0 Sequence length 52 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.337272127750616 33.0 31.0 34.0 31.0 34.0 2 32.68203433043048 34.0 31.0 34.0 31.0 34.0 3 32.83080190438798 34.0 31.0 34.0 31.0 34.0 4 36.240104945843655 37.0 37.0 37.0 35.0 37.0 5 36.187995073359836 37.0 37.0 37.0 35.0 37.0 6 36.31756556710338 37.0 37.0 37.0 35.0 37.0 7 36.268113187313155 37.0 37.0 37.0 35.0 37.0 8 36.260431433731384 37.0 37.0 37.0 35.0 37.0 9 37.826616326674575 39.0 38.0 39.0 35.0 39.0 10 37.62548307117655 39.0 37.0 39.0 35.0 39.0 11 37.2642008763776 39.0 37.0 39.0 35.0 39.0 12 37.26543146757798 39.0 37.0 39.0 35.0 39.0 13 37.25545562692636 39.0 37.0 39.0 35.0 39.0 14 38.50901798180905 40.0 37.0 41.0 35.0 41.0 15 38.5758511262546 40.0 37.0 41.0 35.0 41.0 16 38.42850867239019 40.0 37.0 41.0 34.0 41.0 17 38.3847122379694 40.0 37.0 41.0 34.0 41.0 18 38.250868521626735 40.0 37.0 41.0 34.0 41.0 19 38.068075136606666 40.0 37.0 41.0 34.0 41.0 20 37.76216740814478 40.0 35.0 41.0 34.0 41.0 21 37.7426959923129 40.0 35.0 41.0 34.0 41.0 22 37.70074686981278 39.0 35.0 41.0 34.0 41.0 23 37.71641749035639 39.0 35.0 41.0 34.0 41.0 24 37.64759202802071 39.0 35.0 41.0 34.0 41.0 25 37.54325827344563 39.0 35.0 41.0 34.0 41.0 26 37.439395521061314 39.0 35.0 41.0 34.0 41.0 27 37.498415444596496 39.0 35.0 41.0 34.0 41.0 28 37.45986558979842 39.0 35.0 41.0 34.0 41.0 29 37.358577316862274 39.0 35.0 41.0 33.0 41.0 30 37.30346614146241 39.0 35.0 41.0 33.0 41.0 31 37.21004239375997 39.0 35.0 41.0 33.0 41.0 32 36.98546021225026 39.0 35.0 41.0 33.0 41.0 33 36.57158111017568 39.0 35.0 41.0 31.0 41.0 34 36.375000400815026 39.0 35.0 41.0 31.0 41.0 35 36.262876583531096 39.0 35.0 41.0 31.0 41.0 36 36.24151581473581 39.0 35.0 41.0 31.0 41.0 37 36.15147815237455 39.0 35.0 41.0 31.0 41.0 38 36.045391500084975 38.0 35.0 41.0 31.0 41.0 39 35.98361860080997 38.0 35.0 41.0 30.0 41.0 40 35.89292573948591 38.0 35.0 41.0 30.0 41.0 41 35.8219672286509 38.0 35.0 41.0 30.0 41.0 42 35.74588719248135 38.0 35.0 41.0 30.0 41.0 43 35.65405280996273 37.0 35.0 40.0 30.0 41.0 44 35.45755155104727 37.0 35.0 40.0 30.0 41.0 45 35.37049523992075 37.0 35.0 40.0 29.0 41.0 46 35.35382667903196 37.0 35.0 40.0 29.0 41.0 47 35.27466232670094 37.0 35.0 40.0 29.0 41.0 48 35.18006748656201 36.0 35.0 40.0 29.0 41.0 49 35.121076421708715 36.0 35.0 40.0 29.0 41.0 50 35.019543740676596 36.0 35.0 40.0 28.0 41.0 51 34.90606748442433 36.0 35.0 40.0 28.0 41.0 52 34.52902951815621 35.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 0.0 10 1.0 11 3.0 12 6.0 13 9.0 14 21.0 15 55.0 16 109.0 17 254.0 18 533.0 19 1028.0 20 1869.0 21 3113.0 22 4796.0 23 7668.0 24 13476.0 25 23562.0 26 35255.0 27 42599.0 28 44061.0 29 44323.0 30 47476.0 31 54211.0 32 65348.0 33 86478.0 34 210389.0 35 292863.0 36 249382.0 37 265019.0 38 389496.0 39 920553.0 40 2824.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.61089589818372 17.4453582235308 24.226542790477776 28.717203087807707 2 33.89904663028573 20.13530802723832 24.437318052245615 21.52832729023034 3 26.90006808511245 20.887700180384574 32.64871751661423 19.56351421788875 4 23.52427923660592 23.732631794215507 30.418226430918548 22.32486253826002 5 21.895188830193735 32.09904869670986 27.236004519055818 18.76975795404059 6 80.3878535589346 1.9029272322992068 15.184440823847675 2.524778384918524 7 80.23992609327198 1.7621253671020292 13.800684841460734 4.197263698165265 8 71.47999790507346 3.13305526865117 18.73562632781111 6.651320498464256 9 43.45971417078853 15.052474703227647 24.21670946183546 17.27110166414836 10 29.94273511185946 15.88567116565204 32.679820762645896 21.49177295984261 11 26.683093550939667 12.6251745326764 37.441717041692954 23.250014874690972 12 22.583058671125393 13.983207097383088 39.52862727800993 23.905106953481585 13 18.026486569490103 17.815960703738554 41.979940722129726 22.177612004641617 14 18.115841599326775 17.276053956471845 42.338643449560195 22.26946099464119 15 22.46587817147116 14.60587769405593 41.318150578901594 21.61009355557131 16 21.420801979206786 17.99830481964927 37.568267705959244 23.012625495184697 17 21.193495324359116 20.210875020174356 37.77711905560142 20.81851059986511 18 22.50745605018703 25.505160537997085 33.052774691007244 18.93460872080864 19 24.446296308832075 21.868040292420392 31.20760045048046 22.478062948267073 20 22.663542328382587 25.571571134335024 33.269856109187 18.495030428095387 21 20.55112244239932 20.068220498856164 33.903535758578954 25.47712130016556 22 21.887813833712 21.38431890482371 32.29510959351656 24.43275766794773 23 22.828642491166928 19.396775166997354 34.962043707720696 22.812538634115022 24 25.763178530850823 17.73700905058143 31.53587686392348 24.96393555464427 25 18.912198707344817 18.9896539844042 34.698432118501586 27.399715189749397 26 17.839938349304774 19.890222999229366 34.9616517996951 27.308186851770767 27 21.517460749520538 22.239462216681673 33.3808373364363 22.862239697361495 28 24.0008037677325 22.62413775780868 30.57449084912574 22.800567625333077 29 23.017720299517492 20.913245458053193 33.779051518447645 22.289982723981673 30 26.153412040340875 22.149252114789146 29.351559669243876 22.3457761756261 31 27.255314896317167 21.339748273912356 29.17007062538901 22.234866204381458 32 27.610846731540505 22.988540965611495 26.801485402673027 22.59912690017497 33 20.697339763950236 25.966578796136925 32.83409001272276 20.50199142719008 34 21.73229760355368 25.162597295620852 31.205284630329196 21.899820470496273 35 23.971018757786947 28.9910042856924 28.27242310675468 18.76555384976598 36 26.126691038595457 26.149564216089534 26.10093199291288 21.62281275240213 37 23.06033139030085 29.790888565940843 26.59851267341485 20.550267370343462 38 23.561938035065793 24.33549322159442 25.842058928003286 26.2605098153365 39 24.75854012122784 21.43010088781419 31.287834711721363 22.523524279236607 40 20.76186207616483 21.50919505298062 33.33819061765061 24.39075225320394 41 21.569940796948533 24.77047550200746 28.05124446830729 25.60833923273672 42 20.7565891318204 19.206272238553705 31.099398207412694 28.937740422213203 43 22.524664375311076 20.109228329534794 32.609206062033344 24.756901233120786 44 23.519148804270802 21.554656383950153 31.41082257575493 23.515372236024117 45 22.85454404885882 23.27082162805007 30.442453472501064 23.432180850590054 46 22.65666612393343 22.60732134071023 29.787076369691828 24.94893616566451 47 20.61215321038585 23.417003321598656 32.25884028714745 23.712003180868045 48 23.315392258961424 20.80133790274339 29.7116518887651 26.171617949530084 49 21.602754187091904 19.284725099678244 33.653569694251175 25.45895101897868 50 20.830517236649385 19.120871916975354 35.043560577045376 25.00505026932988 51 19.773149383582115 17.703875008417118 34.241752384671265 28.281223223329498 52 17.729812194111332 18.72230145494073 37.12605294107378 26.421833409874157 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 713.0 1 4020.5 2 7328.0 3 77544.5 4 147761.0 5 84059.0 6 20357.0 7 18322.0 8 16287.0 9 15915.0 10 15543.0 11 15235.5 12 14928.0 13 14334.0 14 13039.0 15 12338.0 16 11604.5 17 10871.0 18 10260.0 19 9649.0 20 9111.0 21 8573.0 22 8193.5 23 7814.0 24 8397.0 25 8980.0 26 9649.0 27 10318.0 28 10905.0 29 11492.0 30 12634.0 31 13776.0 32 16331.0 33 18886.0 34 22093.0 35 25300.0 36 28975.0 37 32650.0 38 36752.0 39 45787.5 40 50721.0 41 63472.5 42 76224.0 43 102521.5 44 128819.0 45 168766.0 46 208713.0 47 229730.5 48 250748.0 49 247044.0 50 243340.0 51 223384.0 52 203428.0 53 177357.0 54 151286.0 55 147016.5 56 142747.0 57 143627.0 58 144507.0 59 144293.0 60 144079.0 61 144909.0 62 145739.0 63 147640.0 64 127124.0 65 104707.0 66 87791.5 67 70876.0 68 57008.0 69 43140.0 70 37424.0 71 31708.0 72 32015.5 73 32323.0 74 25045.0 75 17767.0 76 13393.0 77 9019.0 78 6961.0 79 4903.0 80 3469.5 81 2036.0 82 1672.5 83 1309.0 84 960.5 85 612.0 86 407.5 87 203.0 88 147.5 89 56.5 90 21.0 91 14.5 92 8.0 93 6.5 94 5.0 95 3.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2806781.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.541489468257414 #Duplication Level Percentage of deduplicated Percentage of total 1 73.66636437431276 19.552150342056354 2 10.464026603994862 5.5546170381099005 3 3.8672673699476365 3.079291085112022 4 1.916206735496628 2.0343592355675066 5 1.182644954304386 1.5694579299678817 6 0.8035156940497707 1.2795901998720922 7 0.6160923503383386 1.144640603958528 8 0.4736462585412695 1.0057021746202106 9 0.4361181270535467 1.0417702208497073 >10 5.758533334406138 34.91837081857337 >50 0.6314621281860008 10.97006791303867 >100 0.17058636537728 7.914673576274042 >500 0.007579994235258557 1.3763882724015868 >1k 0.00500821047686726 2.4580414908570827 >5k 5.414281596613253E-4 0.9274597943286531 >10k+ 4.06071119745994E-4 5.173419304412342 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 107705 3.83731399065335 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 21495 0.7658239100236177 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 14803 0.5274013184498542 No Hit CCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGCT 7858 0.2799648422873035 No Hit CTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGCTT 6834 0.2434817679042291 Illumina Single End Adapter 1 (95% over 21bp) GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 5656 0.2015119811627626 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 5468 0.19481391672524503 No Hit GCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGCT 4994 0.17792624362214224 No Hit CGCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC 4479 0.15957782242362337 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 3523 0.12551745219879998 No Hit GGGCCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCT 2948 0.10503135086064783 No Hit CGTTCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCT 2827 0.10072036257905409 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA 2817 0.10036408255578189 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.25235314048370716 0.0 2 0.0 0.0 0.0 0.8371511706827145 0.0 3 0.0 0.0 0.0 1.399574815420227 0.0 4 0.0 0.0 0.0 1.7820414204029456 0.0 5 3.562800232722111E-5 0.0 0.0 3.8263405659365657 0.0 6 3.562800232722111E-5 0.0 0.0 4.601107104544316 0.0 7 3.562800232722111E-5 0.0 0.0 6.8935552862870315 0.0 8 3.562800232722111E-5 0.0 0.0 9.595226702760208 0.0 9 3.562800232722111E-5 0.0 0.0 12.050779879156941 0.0 10 3.562800232722111E-5 0.0 0.0 13.459475463172938 0.0 11 3.562800232722111E-5 0.0 0.0 14.496606610918343 0.0 12 3.562800232722111E-5 0.0 0.0 15.210092985523273 0.0 13 3.562800232722111E-5 0.0 0.0 15.575992569423835 0.0 14 3.562800232722111E-5 0.0 0.0 15.811030500776512 0.0 15 3.562800232722111E-5 0.0 0.0 16.45375966275958 0.0 16 3.562800232722111E-5 0.0 0.0 17.136071535328192 0.0 17 3.562800232722111E-5 0.0 0.0 18.043481126600188 0.0 18 3.562800232722111E-5 0.0 0.0 18.556310592098207 0.0 19 7.125600465444222E-5 0.0 0.0 19.100029535613928 0.0 20 1.0688400698166334E-4 0.0 0.0 19.764099870991004 0.0 21 1.0688400698166334E-4 0.0 0.0 20.460271036464903 0.0 22 1.4251200930888444E-4 0.0 0.0 21.091813005717224 0.0 23 1.4251200930888444E-4 0.0 0.0 21.705042181773354 0.0 24 1.4251200930888444E-4 0.0 0.0 22.156983391294155 0.0 25 1.4251200930888444E-4 0.0 0.0 22.60472049654034 0.0 26 1.4251200930888444E-4 0.0 0.0 23.01326679922659 0.0 27 1.4251200930888444E-4 0.0 0.0 23.473188681268685 0.0 28 1.7814001163610557E-4 0.0 0.0 23.917505498291458 0.0 29 1.7814001163610557E-4 0.0 0.0 24.386655032936307 0.0 30 1.7814001163610557E-4 0.0 0.0 24.824808205556472 0.0 31 1.7814001163610557E-4 0.0 0.0 25.27436233892135 0.0 32 1.7814001163610557E-4 0.0 0.0 25.78630110436119 0.0 33 1.7814001163610557E-4 0.0 0.0 26.26578275968093 0.0 34 1.7814001163610557E-4 0.0 0.0 26.79079700197486 0.0 35 1.7814001163610557E-4 0.0 0.0 27.23450814295807 0.0 36 1.7814001163610557E-4 0.0 0.0 27.734725295632256 0.0 37 1.7814001163610557E-4 0.0 0.0 28.3698300651173 0.0 38 2.1376801396332667E-4 0.0 0.0 29.04359121712738 0.0 39 2.1376801396332667E-4 0.0 0.0 29.800935662597116 0.0 40 2.1376801396332667E-4 0.0 0.0 30.486632195386814 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 27455 0.0 45.229286 1 TCACGAC 610 0.0 43.360653 24 CACGACG 600 0.0 43.316666 25 GCGATCG 70 0.0 42.714283 8 CACTTAC 5495 0.0 42.274796 36 ACTTACT 5460 0.0 42.208794 37 CTTACTG 5470 0.0 42.047535 38 GCACTTA 5520 0.0 42.0 35 CGACGGT 610 0.0 41.85246 27 AATTCGG 55 4.7293724E-11 41.818184 1 CGCACTT 5560 0.0 41.69784 34 CCCGCAC 5630 0.0 41.628773 32 CCGCACT 5565 0.0 41.577717 33 TATTAGG 305 0.0 41.475407 1 ACCCGCA 5645 0.0 41.43667 31 AATGCGG 350 0.0 41.4 1 GACGGTC 640 0.0 41.328125 28 AGGGCGA 1325 0.0 41.13962 5 TAGTAGG 510 0.0 41.039215 1 GTTGATC 2320 0.0 40.84483 15 >>END_MODULE