SRR1043291_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043291_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2750598
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	102585	3.729552628192124	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	21070	0.766015244684974	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	12101	0.43994069653217227	No Hit
CCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC	7487	0.27219535533727574	No Hit
CTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGCT	6549	0.2380936799924962	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5500	0.19995651854614888	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5096	0.18526880336566812	No Hit
GCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC	4886	0.1776340999302697	No Hit
CGCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTG	4463	0.16225562586753864	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3444	0.12520913634053396	No Hit
GGGCCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTC	2924	0.1063041564052617	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTC	2848	0.10354112087626036	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	26000	44.186543	1
ATTGCGG	565	42.212387	1
CATGCGG	405	41.666668	1
CACTTAC	5160	41.511627	36
CGCACTT	5170	41.431335	34
GCACTTA	5170	41.431335	35
ACCCGCA	5290	41.29962	31
CCGCACT	5205	41.239193	33
CCCGCAC	5305	41.140434	32
TCACGAC	570	41.05263	24
TAGTAGG	510	41.02941	1
ACTTACT	5225	40.909092	37
CTTACTG	5255	40.71836	38
CGACGGT	570	40.657894	27
GCGCGAC	2395	40.584553	8
TAGGGTA	1105	40.52036	4
AGGGTAC	1170	40.384617	5
TTATGAC	5900	40.00424	26
TATGCGG	445	39.943817	1
TCAACGC	6155	39.88221	15