##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043289_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1135105 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.20640557481467 33.0 31.0 34.0 31.0 34.0 2 32.4999634395056 34.0 31.0 34.0 31.0 34.0 3 32.58139907761837 34.0 31.0 34.0 31.0 34.0 4 36.13669220028103 37.0 35.0 37.0 35.0 37.0 5 36.09656375401394 37.0 35.0 37.0 35.0 37.0 6 36.326397117447286 37.0 37.0 37.0 35.0 37.0 7 36.267564674633626 37.0 37.0 37.0 35.0 37.0 8 36.16735720484008 37.0 37.0 37.0 35.0 37.0 9 37.68034939498989 39.0 38.0 39.0 35.0 39.0 10 37.50227159601975 39.0 37.0 39.0 35.0 39.0 11 37.21956030499381 39.0 37.0 39.0 34.0 39.0 12 37.23974698375921 39.0 37.0 39.0 34.0 39.0 13 37.22052937833945 39.0 37.0 39.0 34.0 39.0 14 38.61706361966514 40.0 38.0 41.0 35.0 41.0 15 38.74888578589646 40.0 38.0 41.0 35.0 41.0 16 38.80119812704552 40.0 38.0 41.0 35.0 41.0 17 38.74425449628008 40.0 38.0 41.0 35.0 41.0 18 38.52122138480581 40.0 38.0 41.0 35.0 41.0 19 38.29246985961651 40.0 37.0 41.0 35.0 41.0 20 38.044828451993425 40.0 35.0 41.0 34.0 41.0 21 37.97280956387294 40.0 35.0 41.0 34.0 41.0 22 37.94828936530101 40.0 35.0 41.0 34.0 41.0 23 37.905560278564536 40.0 35.0 41.0 34.0 41.0 24 37.83806343906511 40.0 35.0 41.0 34.0 41.0 25 37.82404975751142 40.0 35.0 41.0 34.0 41.0 26 37.79254782597204 40.0 35.0 41.0 34.0 41.0 27 37.804041035851306 40.0 35.0 41.0 34.0 41.0 28 37.75510195092084 40.0 35.0 41.0 34.0 41.0 29 37.72052541394849 40.0 35.0 41.0 34.0 41.0 30 37.64405583624423 40.0 35.0 41.0 34.0 41.0 31 37.497345179520835 40.0 35.0 41.0 34.0 41.0 32 37.21046334920558 40.0 35.0 41.0 33.0 41.0 33 37.02482149228486 40.0 35.0 41.0 33.0 41.0 34 36.70356927332714 40.0 35.0 41.0 32.0 41.0 35 36.54316561022989 40.0 35.0 41.0 31.0 41.0 36 36.452739614396904 40.0 35.0 41.0 31.0 41.0 37 36.3985393421754 39.0 35.0 41.0 31.0 41.0 38 36.35466058206069 39.0 35.0 41.0 30.0 41.0 39 36.296585778408165 39.0 35.0 41.0 30.0 41.0 40 36.26976270917668 39.0 35.0 41.0 30.0 41.0 41 36.21942287277388 39.0 35.0 41.0 30.0 41.0 42 36.11759440756582 39.0 35.0 41.0 30.0 41.0 43 35.989693464481256 39.0 35.0 41.0 30.0 41.0 44 35.882826698851645 39.0 35.0 41.0 29.0 41.0 45 35.8378801961052 39.0 35.0 41.0 29.0 41.0 46 35.75020020174345 39.0 35.0 41.0 29.0 41.0 47 35.62752696887072 38.0 35.0 40.0 28.0 41.0 48 35.61980785918483 38.0 35.0 40.0 28.0 41.0 49 35.5739530704208 38.0 35.0 40.0 28.0 41.0 50 35.49131137648059 38.0 35.0 40.0 27.0 41.0 51 35.05312988666247 38.0 35.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 2.0 14 1.0 15 6.0 16 27.0 17 64.0 18 143.0 19 329.0 20 635.0 21 1005.0 22 1690.0 23 2903.0 24 5353.0 25 10267.0 26 16031.0 27 18593.0 28 17191.0 29 16010.0 30 16971.0 31 19522.0 32 24301.0 33 32872.0 34 62455.0 35 109228.0 36 92081.0 37 88426.0 38 155823.0 39 443084.0 40 91.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.071588090969556 19.842569630122323 26.543535620052772 25.542306658855345 2 32.56817651230503 20.464802815598556 27.055558736856945 19.911461935239473 3 21.718607529699895 22.255033675298762 36.80743191158527 19.21892688341607 4 23.429286277480937 24.530065500548407 34.18758617044238 17.853062051528273 5 20.367454993150414 30.31146898304562 30.049290594262207 19.27178542954176 6 75.15569044273437 1.631919514053766 19.56021689623427 3.652173146977592 7 76.23920254073411 1.4625078737209334 15.714405275282903 6.583884310262047 8 64.10525898485162 3.169750816003806 23.82766352011488 8.897326679029693 9 35.140978147396055 18.581188524409637 27.894688156602253 18.383145171592055 10 27.428475779773677 20.39176992436823 40.23337048114492 11.946383814713176 11 24.271851502724417 16.893855634500774 38.98546830469428 19.84882455808053 12 19.18650697512565 21.26772413124777 41.61623814536981 17.92953074825677 13 14.285198285621153 24.289030530215268 40.702842468317904 20.722928715845672 14 12.546504508393497 23.129930711255785 42.524700358116654 21.798864422234065 15 13.555397958779144 18.666555076402624 46.78377771219402 20.994269252624207 16 14.514780570960395 24.750573735469406 36.98582950475947 23.748816188810725 17 16.329590654609046 21.790847542738337 39.501543910034755 22.378017892617862 18 18.062469991762878 27.58960624788015 37.66374035882143 16.68418340153554 19 17.912704111073424 23.292823130899784 34.88329273503332 23.911180022993467 20 14.637676690702623 28.94428268750468 34.88619995507023 21.531840666722463 21 15.479977623215474 23.620986604763434 35.66780165711542 25.23123411490567 22 13.196576528162593 26.40592720497223 32.17015165997859 28.22734460688659 23 12.97871122054788 23.236616876852803 42.656846723430874 21.127825179168447 24 17.79456526048251 21.454314799071454 38.08308482475189 22.668035115694142 25 13.57495562084565 26.408658229855387 36.94829993701023 23.06808621228873 26 15.310037397421382 23.85920245263654 36.099039295924165 24.73172085401791 27 20.33230405997683 23.72080115936411 37.70223899991631 18.24465578074275 28 15.77008294386863 22.84828275798274 35.267310072636455 26.114324225512174 29 18.231088753903823 26.591284506719642 33.409244078741615 21.76838266063492 30 21.425154501125444 21.98739323674902 35.06415706036006 21.523295201765475 31 23.54381312741993 23.35396284925183 30.60721254861885 22.49501147470939 32 15.97499790768255 24.39236898789099 38.593786477902924 21.03884662652354 33 21.029684478528416 20.912690896436896 37.27355619083697 20.784068434197717 34 18.649640341642403 18.91569502380837 38.09048502120949 24.344179613339737 35 22.26692684817704 19.548764211240368 40.293541126151325 17.890767814431264 36 20.7616035520943 20.312746397910324 38.19047577096392 20.735174279031455 37 19.39776496447465 19.725928438338304 40.008721660110744 20.867584937076305 38 16.999572726752152 20.103514652829475 38.64981653679615 24.247096083622218 39 21.690504402676407 18.81552807890019 39.746719466481075 19.747248051942332 40 15.186260301910396 18.439439523215913 42.73904176265631 23.63525841221737 41 19.01401191960215 22.340752617599254 34.55548165147718 24.08975381132142 42 19.847238801696758 17.25232467480982 40.532373657062564 22.36806286643086 43 23.826606349192364 20.497310821465856 35.52869558322798 20.147387246113794 44 17.188453931574614 23.26586527237568 35.540764951260016 24.00491584478969 45 20.253456728672678 20.396527193519542 35.60630954845587 23.74370652935191 46 23.07090533474877 18.59325789244167 35.314970861726444 23.020865911083117 47 17.109254209962955 17.14185031340713 41.39211790979689 24.356777566833024 48 18.886710921016117 15.431259663202965 35.88126208588633 29.80076732989459 49 20.26596658458909 16.34069094929544 39.35204232207593 24.04130014403954 50 18.68946044639042 15.637760383400654 39.94396994110677 25.72880922910215 51 17.07093176402183 15.306513494346339 37.79403667502125 29.828518066610577 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 381.0 1 1576.5 2 2772.0 3 29245.0 4 55718.0 5 32149.0 6 8580.0 7 8144.0 8 7708.0 9 8039.5 10 8371.0 11 8405.5 12 8440.0 13 8010.5 14 7581.0 15 7002.5 16 6424.0 17 5846.0 18 5268.0 19 4792.0 20 4316.0 21 3978.0 22 3640.0 23 3278.0 24 2916.0 25 3304.0 26 4194.5 27 4697.0 28 4905.0 29 5113.0 30 6638.5 31 8164.0 32 9765.5 33 11367.0 34 12736.0 35 14105.0 36 17081.5 37 20058.0 38 24107.5 39 28157.0 40 36586.5 41 45016.0 42 58764.0 43 72512.0 44 100808.5 45 129105.0 46 156794.5 47 184484.0 48 181387.5 49 178291.0 50 144820.5 51 111350.0 52 89216.0 53 67082.0 54 53609.0 55 40136.0 56 34313.5 57 28491.0 58 24852.0 59 21213.0 60 17152.0 61 13091.0 62 10958.0 63 8825.0 64 7300.0 65 5775.0 66 4741.5 67 3708.0 68 3177.5 69 2647.0 70 2189.5 71 1732.0 72 1669.0 73 1606.0 74 1345.0 75 867.5 76 651.0 77 562.5 78 474.0 79 338.5 80 203.0 81 138.0 82 73.0 83 57.5 84 42.0 85 36.5 86 31.0 87 17.0 88 3.0 89 4.5 90 6.0 91 3.5 92 1.0 93 1.5 94 2.0 95 2.5 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1135105.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.845906724121086 #Duplication Level Percentage of deduplicated Percentage of total 1 70.25839432529696 20.26667089294034 2 12.211802055382568 7.0452100604599135 3 5.464112114658846 4.728518051687672 4 2.938909307355643 3.3910201500252866 5 1.7747046909365154 2.559648298880743 6 1.126136717382702 1.9490660824937593 7 0.7988928431711544 1.6131351905678109 8 0.5905447549525346 1.3627839134223803 9 0.4670075158518339 1.212412971755295 >10 3.5492866772686344 22.455860094136508 >50 0.5886862686101626 11.514435075525292 >100 0.21392700171864337 11.364284849140615 >500 0.012347878886954565 2.4198370247577445 >1k 0.0040130606382602334 2.0834195719689768 >5k 9.260909165215924E-4 1.7759422123925834 >10k+ 3.086969721738641E-4 4.257755559845135 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 47815 4.212385638333018 No Hit CCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC 7156 0.6304262601257152 TruSeq Adapter, Index 19 (95% over 21bp) CTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGCT 6945 0.611837671404848 TruSeq Adapter, Index 13 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC 5843 0.5147541416873329 TruSeq Adapter, Index 19 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC 2927 0.2578616075164853 TruSeq Adapter, Index 19 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTG 2778 0.24473506856193922 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCC 2283 0.20112676800824592 No Hit ACCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTG 2245 0.1977790600869523 No Hit GCCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTG 1977 0.17416890948414462 No Hit AGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTG 1802 0.15875183353081873 No Hit TCCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTG 1568 0.1381370005418001 No Hit ACTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC 1523 0.13417260958237343 TruSeq Adapter, Index 13 (95% over 21bp) TGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGCTT 1473 0.12976773073856604 TruSeq Adapter, Index 19 (95% over 23bp) TGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTG 1281 0.11285299597834561 No Hit CGTTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTC 1247 0.10985767836455658 No Hit GGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTG 1243 0.109505288057052 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6288405037419446 0.0 2 0.0 0.0 0.0 2.2101039110919256 0.0 3 0.0 0.0 0.0 3.7260870139766804 0.0 4 0.0 0.0 0.0 4.693574603230538 0.0 5 0.0 0.0 0.0 9.67637355134547 0.0 6 0.0 0.0 0.0 10.709493835372058 0.0 7 0.0 0.0 0.0 14.522973645609877 0.0 8 0.0 0.0 0.0 19.261478013047252 0.0 9 0.0 0.0 0.0 22.676668678228005 0.0 10 0.0 0.0 0.0 25.037683738508772 0.0 11 0.0 0.0 0.0 27.137401385774883 0.0 12 0.0 0.0 0.0 28.61312389602724 0.0 13 0.0 0.0 0.0 29.230071226890903 0.0 14 0.0 0.0 0.0 29.685183309033086 0.0 15 0.0 0.0 0.0 31.18812797054017 0.0 16 0.0 0.0 0.0 33.004435712995715 0.0 17 0.0 0.0 0.0 34.99218134005224 0.0 18 0.0 0.0 0.0 36.09172719704345 0.0 19 0.0 0.0 0.0 37.18307997938517 0.0 20 0.0 0.0 0.0 38.4575876240524 0.0 21 0.0 0.0 0.0 39.70945419146246 0.0 22 3.523903075045921E-4 0.0 0.0 40.92696270389083 0.0 23 3.523903075045921E-4 0.0 0.0 41.866963849159326 0.0 24 0.0016738539606468124 0.0 0.0 42.62407442483295 0.0 25 0.0016738539606468124 0.0 0.0 43.36858704701327 0.0 26 0.0016738539606468124 0.0 0.0 44.147722016905924 0.0 27 0.0016738539606468124 0.0 0.0 44.88677258931993 0.0 28 0.0018500491143991086 0.0 0.0 45.64908092202924 0.0 29 0.0018500491143991086 0.0 0.0 46.49199853758022 0.0 30 0.0018500491143991086 0.0 0.0 47.29897234176574 0.0 31 0.0018500491143991086 0.0 0.0 47.966928169640696 0.0 32 0.0018500491143991086 0.0 0.0 48.650917756507106 0.0 33 0.0018500491143991086 0.0 0.0 49.29209192101171 0.0 34 0.0018500491143991086 0.0 0.0 50.03889508019082 0.0 35 0.0018500491143991086 0.0 0.0 50.66579743724149 0.0 36 0.0018500491143991086 0.0 0.0 51.23649354024518 0.0 37 0.0018500491143991086 0.0 0.0 51.850709846225676 0.0 38 0.0018500491143991086 0.0 0.0 52.46316420066866 0.0 39 0.0018500491143991086 0.0 0.0 53.04284625651371 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGAACA 30 2.1654778E-6 45.000004 9 TTATCCG 30 2.1654778E-6 45.000004 12 TAGCCGG 30 2.1654778E-6 45.000004 1 TGCTCGT 30 2.1654778E-6 45.000004 10 CCAACGG 60 0.0 45.000004 1 ATACCGG 30 2.1654778E-6 45.000004 1 CTAGCGC 30 2.1654778E-6 45.000004 1 AGCACGG 145 0.0 45.000004 1 AAACTCG 20 7.0332503E-4 45.0 23 ACTGCGA 20 7.0332503E-4 45.0 15 TTTACGG 20 7.0332503E-4 45.0 1 ATTACGG 95 0.0 45.0 1 TTCACTC 20 7.0332503E-4 45.0 19 TTCACGG 95 0.0 45.0 1 GCACCTT 20 7.0332503E-4 45.0 39 CTAACGG 75 0.0 45.0 1 GTGCTCG 40 6.8157533E-9 45.0 9 TAATTCG 20 7.0332503E-4 45.0 25 CAAGCGA 20 7.0332503E-4 45.0 17 CGCACTC 20 7.0332503E-4 45.0 25 >>END_MODULE