SRR1043287_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043287_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	485731
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28431	5.853239756161332	No Hit
CCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC	3645	0.7504153533540169	No Hit
CTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGCT	3321	0.6837117663892154	No Hit
GCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC	2933	0.6038321622461815	No Hit
TCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC	1412	0.29069587899475224	No Hit
CGCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTG	1201	0.24725619736026733	No Hit
ACCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTG	1068	0.2198747866617531	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCC	969	0.19949313508917485	No Hit
AGCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTG	948	0.19516975445256737	No Hit
GCCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTG	946	0.1947580039157476	No Hit
ACTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC	823	0.16943534590133222	No Hit
TCCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTG	802	0.1651119652647247	No Hit
TGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGCTT	702	0.14452443842373658	Illumina Single End Adapter 1 (95% over 21bp)
TGCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTG	641	0.13196604705073384	No Hit
CGGCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCT	589	0.12126053309342003	No Hit
CGTTCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTC	557	0.11467252450430383	No Hit
GGCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTG	549	0.11302552235702477	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	497	0.10232000839971095	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAAGG	65	0.0	45.000004	1
AATCCGG	35	1.2099918E-7	45.000004	1
CAACGCA	65	0.0	45.000004	16
ACGCAAG	65	0.0	45.000004	18
ATTCGGC	35	1.2099918E-7	45.000004	16
TAACGGG	70	0.0	45.000004	2
TCTACGG	35	1.2099918E-7	45.000004	1
TGATTGG	65	0.0	45.000004	1
ATACGAA	65	0.0	45.000004	18
GATTCGG	35	1.2099918E-7	45.000004	15
ACATACG	70	0.0	45.000004	16
CTAGCGG	75	0.0	45.000004	1
TCGCCCT	20	7.029261E-4	45.0	15
ACAACGG	25	3.8874674E-5	45.0	1
CGTGGTT	20	7.029261E-4	45.0	27
CGGGTAC	20	7.029261E-4	45.0	5
TCCATTA	25	3.8874674E-5	45.0	24
ACGCCGG	25	3.8874674E-5	45.0	26
GATGTCA	20	7.029261E-4	45.0	9
TCCGCAA	20	7.029261E-4	45.0	31