##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043287_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 485731 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.17640422373701 33.0 31.0 34.0 30.0 34.0 2 32.46196969104299 34.0 31.0 34.0 31.0 34.0 3 32.521473819871495 34.0 31.0 34.0 31.0 34.0 4 36.09036071405778 37.0 35.0 37.0 35.0 37.0 5 36.038945424525096 37.0 35.0 37.0 35.0 37.0 6 36.297712108142164 37.0 37.0 37.0 35.0 37.0 7 36.23367666465595 37.0 37.0 37.0 35.0 37.0 8 36.139737838433206 37.0 37.0 37.0 35.0 37.0 9 37.69200442220077 39.0 38.0 39.0 35.0 39.0 10 37.53929026559968 39.0 37.0 39.0 35.0 39.0 11 37.157523402871135 39.0 35.0 39.0 34.0 39.0 12 37.07757585988953 39.0 37.0 39.0 33.0 39.0 13 37.09696519266837 39.0 37.0 39.0 33.0 39.0 14 38.506541686653726 40.0 37.0 41.0 34.0 41.0 15 38.648727382028326 40.0 37.0 41.0 35.0 41.0 16 38.69735717917942 40.0 38.0 41.0 35.0 41.0 17 38.67827048304514 40.0 37.0 41.0 35.0 41.0 18 38.43400359458219 40.0 37.0 41.0 35.0 41.0 19 38.18061849048136 40.0 37.0 41.0 35.0 41.0 20 37.89358307375893 40.0 35.0 41.0 34.0 41.0 21 37.81099620983631 40.0 35.0 41.0 34.0 41.0 22 37.78854962932158 39.0 35.0 41.0 34.0 41.0 23 37.74689694501689 39.0 35.0 41.0 34.0 41.0 24 37.66308718199991 39.0 35.0 41.0 34.0 41.0 25 37.62998449759229 39.0 35.0 41.0 34.0 41.0 26 37.62378765201315 39.0 35.0 41.0 34.0 41.0 27 37.62908070516397 39.0 35.0 41.0 34.0 41.0 28 37.572808818049495 39.0 35.0 41.0 34.0 41.0 29 37.5805373756256 39.0 35.0 41.0 34.0 41.0 30 37.480043480856686 39.0 35.0 41.0 34.0 41.0 31 37.32133835394488 39.0 35.0 41.0 33.0 41.0 32 37.16951563725601 40.0 35.0 41.0 33.0 41.0 33 36.92275354053993 39.0 35.0 41.0 33.0 41.0 34 36.69781010476992 39.0 35.0 41.0 32.0 41.0 35 36.58446959325223 39.0 35.0 41.0 32.0 41.0 36 36.5076842943934 39.0 35.0 41.0 31.0 41.0 37 36.43961575439904 39.0 35.0 41.0 31.0 41.0 38 36.40528605339169 39.0 35.0 41.0 31.0 41.0 39 36.33651753748474 39.0 35.0 41.0 31.0 41.0 40 36.271514480237 39.0 35.0 41.0 31.0 41.0 41 36.21119714409828 39.0 35.0 41.0 31.0 41.0 42 36.113085226184864 39.0 35.0 41.0 31.0 41.0 43 35.96177719766702 38.0 35.0 41.0 30.0 41.0 44 35.854277367514115 38.0 35.0 40.0 30.0 41.0 45 35.81873711992852 38.0 35.0 40.0 30.0 41.0 46 35.748039552756566 38.0 35.0 40.0 30.0 41.0 47 35.61184894519806 38.0 35.0 40.0 29.0 41.0 48 35.62760869699484 38.0 35.0 40.0 29.0 41.0 49 35.56253358340316 38.0 35.0 40.0 29.0 41.0 50 35.453024410630576 38.0 35.0 40.0 28.0 41.0 51 35.07312071908114 38.0 35.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 3.0 15 6.0 16 5.0 17 22.0 18 74.0 19 152.0 20 320.0 21 475.0 22 778.0 23 1141.0 24 2077.0 25 3892.0 26 5932.0 27 7201.0 28 6846.0 29 6783.0 30 7125.0 31 8518.0 32 10643.0 33 14460.0 34 28671.0 35 56976.0 36 45798.0 37 35428.0 38 62027.0 39 180325.0 40 53.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.795489684619678 20.22086298795012 25.71629152761508 27.267355799815125 2 32.28041858559573 20.339653017822624 27.224121993449046 20.155806403132598 3 21.145654693647305 22.6477206519658 37.10428199970765 19.102342654679237 4 22.601398716573577 24.79767607997019 34.77521508818667 17.825710115269562 5 19.690734171794677 29.735182642244368 30.869143620645996 19.70493956531496 6 73.12421896070047 1.549005519515946 21.2642388482514 4.062536671532185 7 73.91416236558919 1.3476595070110822 17.05120735551159 7.686970771888143 8 60.692646753038204 2.9950734048269516 26.33638783606564 9.975892006069204 9 33.974772044609054 19.00537540325818 28.741422721629874 18.27842983050289 10 28.00665388867501 18.249813168193917 42.111580277972784 11.631952665158288 11 24.6957678221073 16.002272862963245 38.97383531213779 20.328124002791668 12 16.88918351927301 23.38166598384703 42.71932407031876 17.009826426561204 13 11.035326137306452 27.455114044604933 41.65721356059218 19.852346257496436 14 9.45935095762881 22.486932067337683 48.31666086784661 19.737056107186902 15 9.694872264689716 18.40051386466995 51.14600468160361 20.75860918903673 16 10.62151684780259 24.27969390465093 38.75231352332876 26.346475724217726 17 13.3594520423856 21.23994556657903 41.877705973059165 23.522896417976206 18 15.442498008156777 28.780127272090933 39.39732073925691 16.380053980495376 19 16.655926840164618 22.798009597905015 35.703506673446824 24.842556888483543 20 12.015910040742716 31.171780265208522 35.28372700115908 21.528582692889685 21 13.23901501036582 23.932999952648686 35.339725074166566 27.48825996281893 22 10.983445569667163 27.91401001789056 31.549149632203832 29.553394780238445 23 10.691926189598771 23.040530664091854 44.38794312078084 21.879600025528532 24 16.07700558539603 21.527141566010815 40.03326944337503 22.362583405218114 25 10.797128451756219 27.55496354978373 38.29877030702179 23.349137691438266 26 13.970078088489307 25.430330779793753 35.19025962930099 25.409331502415945 27 18.804647016558548 24.365955642114667 37.663439228708896 19.16595811261789 28 12.28766539504376 25.087136707354485 32.918837792934774 29.706360104666985 29 14.60993842270722 30.35569070123175 30.109258004945122 24.925112871115907 30 19.436684090576883 24.804264088559304 26.6375833537493 29.121468467114514 31 17.457399260084287 32.294418103847605 26.562438880779695 23.68574375528842 32 13.655912428895828 28.177736236723618 26.931161486501786 31.235189847878765 33 10.738248124990992 32.48299984971105 28.777245018333193 28.00150700696476 34 10.963475668631403 30.264487957326175 29.69956622080946 29.07247015323296 35 14.733875334289968 28.052358198262002 27.51564137351744 29.69812509393059 36 13.282866442537125 31.79743520590615 31.96069429375519 22.95900405780154 37 12.87379228420669 31.194632420002016 31.915607609973424 24.01596768581787 38 12.187815889864966 27.03101099168058 31.687086062038457 29.094087056416 39 19.08010812569097 23.140380169270646 35.52274818778295 22.256763517255436 40 11.736537301510506 20.63817215701695 40.58707391539762 27.038216626074924 41 16.789128138825813 25.346127795014112 30.37586647753592 27.488877588624156 42 17.46892827511524 18.29572335304932 36.239811747654564 27.995536624180872 43 21.200623390312746 24.316957328233116 32.79984188779386 21.682577393660278 44 13.04734513547622 28.07479860251868 33.096302274304094 25.78155398770101 45 17.229701213222956 25.429919029256936 32.081748951580195 25.258630805939912 46 21.236651562284475 21.76616275263469 32.30862349736788 24.688562187712954 47 15.120920838900545 18.558214320271922 38.042867348388306 28.277997492439233 48 16.91718255577676 16.51037302539883 33.297030661003724 33.27541375782069 49 18.713650147921378 18.09293621366559 38.15506936967169 25.03834426874134 50 16.8055981602986 17.340256232359064 38.14642260839848 27.70772299894386 51 14.816225441653918 16.444287064239262 37.38941924645534 31.350068247651482 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 153.0 1 824.5 2 1496.0 3 16144.5 4 30793.0 5 16922.5 6 3052.0 7 2895.5 8 2739.0 9 2987.5 10 3236.0 11 3389.5 12 3543.0 13 3340.0 14 3137.0 15 2913.0 16 2689.0 17 2384.0 18 2079.0 19 1945.5 20 1812.0 21 1624.0 22 1436.0 23 1437.0 24 1438.0 25 1434.0 26 1606.5 27 1783.0 28 1827.0 29 1871.0 30 2349.5 31 2828.0 32 3199.5 33 3571.0 34 4798.5 35 6026.0 36 7202.0 37 8378.0 38 9718.0 39 11058.0 40 14991.5 41 18925.0 42 27180.0 43 35435.0 44 48559.5 45 61684.0 46 74497.0 47 87310.0 48 82878.0 49 78446.0 50 60625.0 51 42804.0 52 32581.0 53 22358.0 54 17526.5 55 12695.0 56 11224.5 57 9754.0 58 8641.5 59 7529.0 60 6079.5 61 4630.0 62 3660.5 63 2691.0 64 2340.5 65 1990.0 66 1699.5 67 1409.0 68 1175.0 69 941.0 70 829.5 71 718.0 72 735.5 73 753.0 74 669.0 75 439.5 76 294.0 77 199.5 78 105.0 79 101.0 80 97.0 81 56.5 82 16.0 83 10.5 84 5.0 85 5.5 86 6.0 87 3.0 88 0.0 89 0.5 90 1.0 91 1.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 485731.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.98637780096884 #Duplication Level Percentage of deduplicated Percentage of total 1 73.5076497583437 22.777358066733335 2 11.222255013430745 6.954740672499633 3 4.573487549082684 4.251474391917092 4 2.353289527280864 2.916796734695528 5 1.3024664096968457 2.0179358121968956 6 0.9256342890488436 1.7209232271599193 7 0.6532298792665622 1.4168859480884468 8 0.48075289822226325 1.1917432746580616 9 0.4144162307723397 1.1557132104208683 >10 3.9684608893310545 27.26311284509013 >50 0.41091221204327844 8.483355445868595 >100 0.1761052337328336 9.610693796869214 >500 0.006670652792910364 1.5556194407096888 >1k 0.004002391675746218 2.8069774122824307 >5k 0.0 0.0 >10k+ 6.670652792910364E-4 5.876669720810146 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 28431 5.853239756161332 No Hit CCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC 3645 0.7504153533540169 No Hit CTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGCT 3321 0.6837117663892154 No Hit GCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC 2933 0.6038321622461815 No Hit TCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC 1412 0.29069587899475224 No Hit CGCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTG 1201 0.24725619736026733 No Hit ACCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTG 1068 0.2198747866617531 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCC 969 0.19949313508917485 No Hit AGCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTG 948 0.19516975445256737 No Hit GCCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTG 946 0.1947580039157476 No Hit ACTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC 823 0.16943534590133222 No Hit TCCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTG 802 0.1651119652647247 No Hit TGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGCTT 702 0.14452443842373658 Illumina Single End Adapter 1 (95% over 21bp) TGCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTG 641 0.13196604705073384 No Hit CGGCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCT 589 0.12126053309342003 No Hit CGTTCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTC 557 0.11467252450430383 No Hit GGCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTG 549 0.11302552235702477 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 497 0.10232000839971095 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.7042992932302036 0.0 2 0.0 0.0 0.0 2.571999728244646 0.0 3 0.0 0.0 0.0 4.28014683024143 0.0 4 0.0 0.0 0.0 5.433254208605175 0.0 5 0.0 0.0 0.0 11.250465792794778 0.0 6 0.0 0.0 0.0 12.472335510807422 0.0 7 0.0 0.0 0.0 17.2222897035602 0.0 8 0.0 0.0 0.0 22.978768083568887 0.0 9 0.0 0.0 0.0 27.39643959310812 0.0 10 0.0 0.0 0.0 29.861590057048037 0.0 11 0.0 0.0 0.0 32.11468899452578 0.0 12 0.0 0.0 0.0 33.74542699560045 0.0 13 0.0 0.0 0.0 34.35811179438825 0.0 14 0.0 0.0 0.0 34.81309613757409 0.0 15 0.0 0.0 0.0 36.37321892158417 0.0 16 0.0 0.0 0.0 38.15898099977148 0.0 17 0.0 0.0 0.0 40.50060630266547 0.0 18 0.0 0.0 0.0 41.408104485816224 0.0 19 0.0 0.0 0.0 42.5284776965028 0.0 20 0.0 0.0 0.0 43.653997788899616 0.0 21 6.176258052296436E-4 0.0 0.0 44.622640926768106 0.0 22 0.0014411268788691682 0.0 0.0 45.5997249506414 0.0 23 0.0014411268788691682 0.0 0.0 46.32852340081239 0.0 24 0.004323380636607505 0.0 0.0 46.950472586678636 0.0 25 0.004323380636607505 0.0 0.0 47.49233629313344 0.0 26 0.004323380636607505 0.0 0.0 48.037082253345986 0.0 27 0.004323380636607505 0.0 0.0 48.56844632111189 0.0 28 0.004323380636607505 0.0 0.0 49.13007405333405 0.0 29 0.004323380636607505 0.0 0.0 49.847755239010894 0.0 30 0.004323380636607505 0.0 0.0 50.45817540984619 0.0 31 0.004323380636607505 0.0 0.0 50.9374530347044 0.0 32 0.004323380636607505 0.0 0.0 51.43958281435609 0.0 33 0.004323380636607505 0.0 0.0 51.905066796230834 0.0 34 0.004323380636607505 0.0 0.0 52.516516343408185 0.0 35 0.004323380636607505 0.0 0.0 52.99311758977706 0.0 36 0.004323380636607505 0.0 0.0 53.43863167061604 0.0 37 0.004323380636607505 0.0 0.0 53.89176313638619 0.0 38 0.004323380636607505 0.0 0.0 54.36136462362913 0.0 39 0.004323380636607505 0.0 0.0 54.79782019265808 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTAAGG 65 0.0 45.000004 1 AATCCGG 35 1.2099918E-7 45.000004 1 CAACGCA 65 0.0 45.000004 16 ACGCAAG 65 0.0 45.000004 18 ATTCGGC 35 1.2099918E-7 45.000004 16 TAACGGG 70 0.0 45.000004 2 TCTACGG 35 1.2099918E-7 45.000004 1 TGATTGG 65 0.0 45.000004 1 ATACGAA 65 0.0 45.000004 18 GATTCGG 35 1.2099918E-7 45.000004 15 ACATACG 70 0.0 45.000004 16 CTAGCGG 75 0.0 45.000004 1 TCGCCCT 20 7.029261E-4 45.0 15 ACAACGG 25 3.8874674E-5 45.0 1 CGTGGTT 20 7.029261E-4 45.0 27 CGGGTAC 20 7.029261E-4 45.0 5 TCCATTA 25 3.8874674E-5 45.0 24 ACGCCGG 25 3.8874674E-5 45.0 26 GATGTCA 20 7.029261E-4 45.0 9 TCCGCAA 20 7.029261E-4 45.0 31 >>END_MODULE