SRR1043285_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043285_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1363233
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	62336	4.572659259275561	No Hit
CTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGCT	8902	0.6530064926538603	No Hit
CCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	8887	0.6519061671775844	No Hit
GCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	7034	0.5159792933416371	No Hit
CGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTG	4066	0.29826155910251584	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCC	3051	0.22380620187451447	No Hit
TCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	2948	0.21625063360408678	No Hit
ACCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTG	2611	0.19152998790375528	No Hit
GCCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTG	2587	0.18976946714171386	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTC	2144	0.15727318807569945	No Hit
AGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTG	2013	0.14766367891622342	No Hit
ACTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	1800	0.13203905715310588	No Hit
TGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGCTT	1779	0.13049860148631964	Illumina Single End Adapter 1 (95% over 21bp)
TCCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTG	1720	0.12617065461296784	No Hit
GGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTG	1481	0.10863880202430547	No Hit
TGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTG	1459	0.10702499132576748	No Hit
CGTCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCT	1435	0.10526447056372608	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTC	1398	0.10255033438891223	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCT	1370	0.10049639349986393	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTT	1366	0.10020297337285702	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAA	20	7.0337486E-4	45.000004	12
CTTCGAC	25	3.891188E-5	45.000004	21
GTATTCG	20	7.0337486E-4	45.000004	8
CTATCGG	50	2.1827873E-11	45.000004	1
CGCATGA	20	7.0337486E-4	45.000004	25
CGACATC	20	7.0337486E-4	45.000004	10
CCGTACT	20	7.0337486E-4	45.000004	24
TCGTGGA	20	7.0337486E-4	45.000004	20
TGATTCG	20	7.0337486E-4	45.000004	45
GATATCG	25	3.891188E-5	45.000004	8
TACTCCG	20	7.0337486E-4	45.000004	21
TTACGAG	20	7.0337486E-4	45.000004	20
CGACTCT	20	7.0337486E-4	45.000004	21
CGATCCG	25	3.891188E-5	45.000004	9
TCGACAT	20	7.0337486E-4	45.000004	18
TACCGGC	20	7.0337486E-4	45.000004	2
GCGATCC	45	3.8562575E-10	45.0	8
ACGTAGG	140	0.0	45.0	1
TTACCGG	70	0.0	45.0	1
CGACGGT	110	0.0	44.999996	27

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content