FastQCFastQC Report
Thu 26 May 2016
SRR1043285_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1043285_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences1363233
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT623364.572659259275561No Hit
CTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGCT89020.6530064926538603No Hit
CCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC88870.6519061671775844No Hit
GCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC70340.5159792933416371No Hit
CGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTG40660.29826155910251584No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCC30510.22380620187451447No Hit
TCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC29480.21625063360408678No Hit
ACCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTG26110.19152998790375528No Hit
GCCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTG25870.18976946714171386No Hit
CGTTCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTC21440.15727318807569945No Hit
AGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTG20130.14766367891622342No Hit
ACTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC18000.13203905715310588No Hit
TGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGCTT17790.13049860148631964Illumina Single End Adapter 1 (95% over 21bp)
TCCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTG17200.12617065461296784No Hit
GGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTG14810.10863880202430547No Hit
TGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTG14590.10702499132576748No Hit
CGTCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCT14350.10526447056372608No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTC13980.10255033438891223No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCT13700.10049639349986393No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTT13660.10020297337285702No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCACGAA207.0337486E-445.00000412
CTTCGAC253.891188E-545.00000421
GTATTCG207.0337486E-445.0000048
CTATCGG502.1827873E-1145.0000041
CGCATGA207.0337486E-445.00000425
CGACATC207.0337486E-445.00000410
CCGTACT207.0337486E-445.00000424
TCGTGGA207.0337486E-445.00000420
TGATTCG207.0337486E-445.00000445
GATATCG253.891188E-545.0000048
TACTCCG207.0337486E-445.00000421
TTACGAG207.0337486E-445.00000420
CGACTCT207.0337486E-445.00000421
CGATCCG253.891188E-545.0000049
TCGACAT207.0337486E-445.00000418
TACCGGC207.0337486E-445.0000042
GCGATCC453.8562575E-1045.08
ACGTAGG1400.045.01
TTACCGG700.045.01
CGACGGT1100.044.99999627