##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043283_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2328775 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.30788032334596 33.0 31.0 34.0 31.0 34.0 2 32.59044819701345 34.0 31.0 34.0 31.0 34.0 3 32.71307919399684 34.0 31.0 34.0 31.0 34.0 4 36.18146750974225 37.0 37.0 37.0 35.0 37.0 5 36.17480091464397 37.0 37.0 37.0 35.0 37.0 6 36.32129123680905 37.0 37.0 37.0 35.0 37.0 7 36.273946602827664 37.0 37.0 37.0 35.0 37.0 8 36.172650857210336 37.0 37.0 37.0 35.0 37.0 9 37.765991562087365 39.0 38.0 39.0 35.0 39.0 10 37.57894085946474 39.0 37.0 39.0 35.0 39.0 11 37.33337870768967 39.0 37.0 39.0 35.0 39.0 12 37.36332578286868 39.0 37.0 39.0 35.0 39.0 13 37.36958830286309 39.0 37.0 39.0 35.0 39.0 14 38.74287855202843 40.0 38.0 41.0 35.0 41.0 15 38.809362003628515 41.0 38.0 41.0 35.0 41.0 16 38.75131689407521 41.0 38.0 41.0 35.0 41.0 17 38.71711608034267 40.0 38.0 41.0 34.0 41.0 18 38.54857940333437 40.0 38.0 41.0 34.0 41.0 19 38.36499661839379 40.0 37.0 41.0 34.0 41.0 20 38.165669074942834 40.0 35.0 41.0 34.0 41.0 21 38.091656342927074 40.0 35.0 41.0 34.0 41.0 22 38.05052227029232 40.0 35.0 41.0 34.0 41.0 23 38.02772358858198 40.0 35.0 41.0 34.0 41.0 24 37.92974331998583 40.0 35.0 41.0 34.0 41.0 25 37.8996068748591 40.0 35.0 41.0 34.0 41.0 26 37.861292739745146 40.0 35.0 41.0 34.0 41.0 27 37.855536923919225 40.0 35.0 41.0 34.0 41.0 28 37.75445373640648 40.0 35.0 41.0 34.0 41.0 29 37.73617803351547 40.0 35.0 41.0 34.0 41.0 30 37.62804650513682 40.0 35.0 41.0 34.0 41.0 31 37.500652918379835 40.0 35.0 41.0 33.0 41.0 32 37.32992624877886 40.0 35.0 41.0 33.0 41.0 33 37.02975770523129 40.0 35.0 41.0 33.0 41.0 34 36.79535463924166 40.0 35.0 41.0 32.0 41.0 35 36.6392940494466 39.0 35.0 41.0 31.0 41.0 36 36.54822170454423 39.0 35.0 41.0 31.0 41.0 37 36.47635473585898 39.0 35.0 41.0 31.0 41.0 38 36.329650137948065 39.0 35.0 41.0 31.0 41.0 39 36.224887762879625 39.0 35.0 41.0 31.0 41.0 40 36.10863307962341 39.0 35.0 41.0 31.0 41.0 41 36.02636450494359 38.0 35.0 41.0 30.0 41.0 42 35.91774173116767 38.0 35.0 41.0 30.0 41.0 43 35.797106203905486 38.0 35.0 40.0 30.0 41.0 44 35.68922759820077 38.0 35.0 40.0 30.0 41.0 45 35.62605361187749 38.0 35.0 40.0 29.0 41.0 46 35.50726154308596 37.0 35.0 40.0 29.0 41.0 47 35.331934171399126 37.0 35.0 40.0 29.0 41.0 48 35.24003821751779 37.0 35.0 40.0 28.0 41.0 49 35.151929662590845 36.0 35.0 40.0 28.0 41.0 50 34.975458771242394 36.0 35.0 40.0 28.0 41.0 51 34.52473338987236 36.0 34.0 39.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 2.0 13 7.0 14 15.0 15 26.0 16 78.0 17 171.0 18 344.0 19 758.0 20 1342.0 21 2273.0 22 3674.0 23 5498.0 24 8893.0 25 15969.0 26 25704.0 27 32911.0 28 35322.0 29 35408.0 30 37108.0 31 42798.0 32 51098.0 33 66527.0 34 142686.0 35 219080.0 36 198038.0 37 219420.0 38 369177.0 39 814301.0 40 145.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.821021781838095 17.959485137035568 23.77065195220663 26.44884112891971 2 33.47008620412019 20.26443087030735 25.245590492855683 21.019892432716773 3 26.906034288413437 21.1890800957585 32.04633337269595 19.85855224313212 4 23.52700454101405 24.23299803544782 29.709611276314803 22.530386147223325 5 21.553177099548044 32.65974600380028 26.804221103369798 18.982855793281875 6 79.90338267973506 2.146450387006044 15.024422711511418 2.925744221747485 7 79.85962576891285 2.050262477053386 13.26555807237711 4.824553681656665 8 69.73808118001953 4.017519940741377 19.023392126761923 7.221006752477161 9 38.91913130293824 19.566252643557235 23.363785681313136 18.150830372191386 10 27.3855997251774 17.5398653798671 35.009951583987295 20.064583310968214 11 24.4705478202059 14.780174125881635 38.022994922223056 22.726283131689407 12 21.073311075565478 16.695472941782697 40.59129800002147 21.63991798263035 13 16.825068974031414 20.679670642290475 40.33459651533531 22.160663868342798 14 16.49648420306814 20.027095790705413 40.402658049833065 23.073761956393383 15 19.280351257635452 15.641614153363893 41.76199933441402 23.31603525458664 16 18.92475657802922 20.35293233567004 36.12628957284409 24.596021513456645 17 19.779111335358717 21.640519157067555 35.692842803619925 22.887526703953796 18 20.703846442872326 26.251999441766593 33.51792251290915 19.526231602451933 19 21.567991755322005 21.699305428819873 32.234157443291004 24.498545372567122 20 21.202434756470677 25.822632070509172 33.1230367897285 19.851896383291646 21 19.118592392996316 20.4452555528121 33.985249755772884 26.4509022984187 22 19.36361391718822 23.268156004766453 31.855503429914872 25.512726648130457 23 20.174512350914107 21.35891187426866 36.105677877854234 22.360897896962996 24 23.958347199708 19.702161007396594 32.30449485244388 24.034996940451524 25 18.76402829813958 21.66538201414907 33.863683696363964 25.706905991347384 26 19.085012506575346 19.940183143498192 34.560702515270904 26.414101834655558 27 23.230926130691028 21.051239385513842 34.39641012978927 21.32142435400586 28 21.457504481970137 23.312041738682353 30.960097046730578 24.270356732616936 29 23.56839969511868 21.003145430537515 33.52191602881343 21.906538845530378 30 27.53082629279342 20.995501926978775 29.51938250797093 21.954289272256876 31 25.936468744296892 23.116960633809622 28.022243454176554 22.924327167716932 32 27.733894429474727 19.60361134072635 29.30489205698275 23.35760217281618 33 23.49840581421563 23.86379104894204 30.6251140621142 22.01268907472813 34 22.67548389174566 21.633004476602505 31.51270517761484 24.178806454036994 35 25.383087674850515 25.39180470418997 29.826754409507146 19.398353211452374 36 22.579854215198978 24.287275498921108 30.36437612049253 22.76849416538738 37 23.326212278987878 25.90898648431042 29.74971819948256 21.01508303721914 38 22.03342959281167 22.105184055995107 29.035522968084077 26.825863383109144 39 24.573821000311323 19.59450784210583 34.07581239063456 21.75585876694829 40 21.028523579993774 19.043445588345804 35.513735762364334 24.414295069296088 41 22.567143669955232 23.58076671211259 28.91597513714292 24.936114480789257 42 21.524921900999452 18.675913302057946 32.77860677824178 27.020558018700818 43 23.16350871166171 20.89085463387403 33.31202026816674 22.63361638629752 44 22.503590943736516 21.584481111313888 32.417987997981776 23.493939946967828 45 24.141404815836655 21.336110186686135 30.915824843533617 23.606660153943597 46 24.385739283528892 20.444697319406124 30.705628495668325 24.46393490139666 47 20.70363173771618 22.388251333855784 33.35676482270722 23.55135210572082 48 22.071775933699048 20.099752015544652 31.08861955319857 26.73985249755773 49 21.978422131807495 17.8429002372492 34.86425266502775 25.314424965915556 50 20.774269734087664 18.691415014331568 35.94413371837125 24.59018153320952 51 19.989865916629988 17.163530182177325 34.152204485190715 28.694399416001975 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 642.0 1 3731.0 2 6820.0 3 57654.5 4 108489.0 5 62194.5 6 15900.0 7 14398.5 8 12897.0 9 12733.5 10 12570.0 11 12041.5 12 11513.0 13 10908.5 14 10304.0 15 9618.0 16 8932.0 17 8375.0 18 7818.0 19 7069.5 20 6321.0 21 6527.5 22 6734.0 23 6728.5 24 6723.0 25 7139.0 26 9401.5 27 11248.0 28 11320.0 29 11392.0 30 14051.5 31 16711.0 32 19206.5 33 21702.0 34 25718.0 35 29734.0 36 33795.0 37 37856.0 38 41911.0 39 45966.0 40 52691.0 41 59416.0 42 68062.5 43 76709.0 44 92121.0 45 107533.0 46 135785.5 47 164038.0 48 209975.5 49 255913.0 50 264110.0 51 272307.0 52 229785.0 53 187263.0 54 164112.5 55 140962.0 56 130042.0 57 119122.0 58 114717.5 59 110313.0 60 103961.0 61 97609.0 62 92755.0 63 87901.0 64 86112.5 65 84324.0 66 68304.0 67 52284.0 68 44166.5 69 36049.0 70 31167.0 71 26285.0 72 24275.5 73 22266.0 74 19000.5 75 11589.0 76 7443.0 77 5598.0 78 3753.0 79 3017.0 80 2281.0 81 1500.0 82 719.0 83 596.5 84 474.0 85 309.0 86 144.0 87 103.0 88 62.0 89 45.0 90 28.0 91 17.5 92 7.0 93 6.0 94 5.0 95 3.5 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2328775.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.191005875809637 #Duplication Level Percentage of deduplicated Percentage of total 1 72.5663502803642 19.005857065790796 2 11.332124402496504 5.935994736223835 3 4.3932897959630735 3.4519403658061014 4 2.1802322571158963 2.2840990342700858 5 1.275824932221868 1.6707569148163692 6 0.8676667544179703 1.363503903792344 7 0.5978142407587091 1.0960149404647819 8 0.4564462014433191 0.9563828115194369 9 0.3862768332601696 0.9105280928645617 >10 4.969207198855688 31.45626908025092 >50 0.7798695938067105 13.404974775735202 >100 0.17979072647816252 8.250298392480826 >500 0.008134421517218242 1.46051393240634 >1k 0.005810301083727315 2.6590214655783435 >5k 6.64034409568836E-4 1.1968987982281485 >10k+ 4.98025807176627E-4 4.896945689771929 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 85487 3.670899936661979 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 16678 0.7161705188350098 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 10462 0.4492490687163852 No Hit CCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC 7910 0.3396635570203218 No Hit CTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGCT 7631 0.3276830093074685 Illumina Single End Adapter 1 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC 6587 0.2828525727045335 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 5400 0.23188156863587078 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 4675 0.20074932099494372 No Hit CGCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTG 3733 0.1602988695773529 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3328 0.1429077519296626 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3096 0.1329454326845659 No Hit TCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC 2562 0.11001492200835203 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 2469 0.10602140610406759 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCC 2331 0.10009554379448422 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.339620615989093 0.0 2 0.0 0.0 0.0 1.160352545866389 0.0 3 0.0 0.0 0.0 1.917789395712338 0.0 4 0.0 0.0 0.0 2.42277592296379 0.0 5 0.0 0.0 0.0 5.033848267866153 0.0 6 0.0 0.0 0.0 5.745080568109843 0.0 7 0.0 0.0 0.0 8.11954783094116 0.0 8 0.0 0.0 0.0 10.776438256164722 0.0 9 0.0 0.0 0.0 13.132999108973602 0.0 10 0.0 0.0 0.0 14.515227963199536 0.0 11 0.0 0.0 0.0 15.766658436302349 0.0 12 0.0 0.0 0.0 16.679928288477846 0.0 13 0.0 0.0 0.0 17.105731554143272 0.0 14 0.0 0.0 0.0 17.39231999656472 0.0 15 0.0 0.0 0.0 18.275788773067386 0.0 16 0.0 0.0 0.0 19.269573058797008 0.0 17 0.0 0.0 0.0 20.46685489152022 0.0 18 0.0 0.0 0.0 21.1288338289444 0.0 19 0.0 0.0 0.0 21.853936082275016 0.0 20 4.294103122886496E-5 0.0 0.0 22.645296346791767 0.0 21 4.294103122886496E-5 0.0 0.0 23.422529012034225 0.0 22 4.294103122886496E-5 0.0 0.0 24.221962190422 0.0 23 4.294103122886496E-5 0.0 0.0 24.87840173481766 0.0 24 4.294103122886496E-5 0.0 0.0 25.415164625178473 0.0 25 4.294103122886496E-5 0.0 0.0 25.939088147201854 0.0 26 8.588206245772992E-5 0.0 0.0 26.456956983821968 0.0 27 8.588206245772992E-5 0.0 0.0 27.016478620734077 0.0 28 8.588206245772992E-5 0.0 0.0 27.569301456774486 0.0 29 8.588206245772992E-5 0.0 0.0 28.146171270303057 0.0 30 8.588206245772992E-5 0.0 0.0 28.701184098936135 0.0 31 8.588206245772992E-5 0.0 0.0 29.213599424590182 0.0 32 8.588206245772992E-5 0.0 0.0 29.7743234103767 0.0 33 8.588206245772992E-5 0.0 0.0 30.30176809696085 0.0 34 8.588206245772992E-5 0.0 0.0 30.91157368144196 0.0 35 8.588206245772992E-5 0.0 0.0 31.417676675505362 0.0 36 8.588206245772992E-5 0.0 0.0 31.91948556644588 0.0 37 8.588206245772992E-5 0.0 0.0 32.48755246857253 0.0 38 8.588206245772992E-5 0.0 0.0 33.092162188274955 0.0 39 8.588206245772992E-5 0.0 0.0 33.782611029403874 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATTCGA 20 7.0347794E-4 45.0 18 TATACGA 20 7.0347794E-4 45.0 32 TAATGCG 20 7.0347794E-4 45.0 39 CGTTTTT 19850 0.0 44.172546 1 ACTACGG 95 0.0 42.63158 1 TAGTAGG 625 0.0 42.48 1 TACGGGT 170 0.0 42.35294 3 CCGGTAT 70 0.0 41.785717 42 CGGTCTA 605 0.0 41.652893 30 TCACGAC 635 0.0 41.45669 24 CTTGCGG 725 0.0 41.27586 1 CGGGTAT 175 0.0 41.14286 5 ATAGCGG 400 0.0 41.0625 1 GCGCGAC 2370 0.0 41.012657 8 GACGGTC 620 0.0 41.008064 28 TATACGG 165 0.0 40.90909 1 TAGGGTA 1075 0.0 40.813953 4 ACGATGG 160 0.0 40.78125 1 TACGGGA 415 0.0 40.66265 3 CACTTAC 4800 0.0 40.64063 36 >>END_MODULE