##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043282_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2061628 Sequences flagged as poor quality 0 Sequence length 52 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.33937451373381 33.0 31.0 34.0 31.0 34.0 2 32.66832716668574 34.0 31.0 34.0 31.0 34.0 3 32.78439563296579 34.0 31.0 34.0 31.0 34.0 4 36.20989771190535 37.0 37.0 37.0 35.0 37.0 5 36.1575255089667 37.0 37.0 37.0 35.0 37.0 6 36.31409788768876 37.0 37.0 37.0 35.0 37.0 7 36.26226118387992 37.0 37.0 37.0 35.0 37.0 8 36.259499288911485 37.0 37.0 37.0 35.0 37.0 9 37.80369348883504 39.0 38.0 39.0 35.0 39.0 10 37.68472828269697 39.0 37.0 39.0 35.0 39.0 11 37.41357655212288 39.0 37.0 39.0 35.0 39.0 12 37.40588505782809 39.0 37.0 39.0 35.0 39.0 13 37.385916857939456 39.0 37.0 39.0 35.0 39.0 14 38.803315632112096 41.0 38.0 41.0 35.0 41.0 15 38.86243929554701 41.0 38.0 41.0 35.0 41.0 16 38.756991562008274 41.0 38.0 41.0 35.0 41.0 17 38.76061200177724 41.0 38.0 41.0 34.0 41.0 18 38.52348774851719 40.0 38.0 41.0 34.0 41.0 19 38.257185098378564 40.0 37.0 41.0 34.0 41.0 20 37.987172758616005 40.0 35.0 41.0 34.0 41.0 21 37.922994352036355 40.0 35.0 41.0 34.0 41.0 22 37.868957445281104 40.0 35.0 41.0 34.0 41.0 23 37.87823554976941 40.0 35.0 41.0 34.0 41.0 24 37.77494727467807 40.0 35.0 41.0 34.0 41.0 25 37.67703581829505 40.0 35.0 41.0 34.0 41.0 26 37.589830464079846 40.0 35.0 41.0 34.0 41.0 27 37.60308843302477 40.0 35.0 41.0 34.0 41.0 28 37.54058976692206 39.0 35.0 41.0 34.0 41.0 29 37.48833688715908 39.0 35.0 41.0 34.0 41.0 30 37.34830774514122 39.0 35.0 41.0 33.0 41.0 31 37.25848552697189 40.0 35.0 41.0 33.0 41.0 32 36.977248077732746 39.0 35.0 41.0 33.0 41.0 33 36.62078900752221 39.0 35.0 41.0 31.0 41.0 34 36.3668605587429 39.0 35.0 41.0 31.0 41.0 35 36.16633747698421 39.0 35.0 41.0 30.0 41.0 36 36.11417869761179 39.0 35.0 41.0 30.0 41.0 37 36.07148816372304 39.0 35.0 41.0 30.0 41.0 38 36.01607613012629 39.0 35.0 41.0 30.0 41.0 39 35.978733311732285 39.0 35.0 41.0 29.0 41.0 40 35.89316016274517 39.0 35.0 41.0 29.0 41.0 41 35.876646514308106 39.0 35.0 41.0 29.0 41.0 42 35.79095258698465 39.0 35.0 41.0 29.0 41.0 43 35.67336929843793 39.0 35.0 41.0 28.0 41.0 44 35.479723306047454 38.0 35.0 41.0 27.0 41.0 45 35.37688855603436 38.0 35.0 41.0 26.0 41.0 46 35.34272477867006 38.0 35.0 41.0 26.0 41.0 47 35.24962796391978 38.0 35.0 40.0 26.0 41.0 48 35.16265349519894 38.0 35.0 40.0 26.0 41.0 49 35.1106426571622 37.0 35.0 40.0 26.0 41.0 50 35.00104238009961 37.0 35.0 40.0 26.0 41.0 51 34.87010120157468 37.0 35.0 40.0 26.0 41.0 52 34.47445950481852 36.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 4.0 13 3.0 14 14.0 15 23.0 16 81.0 17 198.0 18 403.0 19 822.0 20 1465.0 21 2456.0 22 3994.0 23 6270.0 24 11590.0 25 21426.0 26 31694.0 27 36683.0 28 36234.0 29 34186.0 30 34880.0 31 38418.0 32 45098.0 33 58115.0 34 119239.0 35 182314.0 36 183689.0 37 169822.0 38 279167.0 39 761095.0 40 2243.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.206010007625043 17.367488218049036 23.57612527575295 30.850376498572974 2 35.66167126174072 19.23387730473199 23.903972976696085 21.200478456831203 3 25.047826280977947 20.26325796894493 35.22027252249194 19.46864322758519 4 22.033024386552764 23.238430987549645 33.8156059192056 20.912938706691993 5 20.035379806638247 31.211838411197363 30.45462129928387 18.29816048288052 6 76.45292943246793 1.7544387251240283 18.79728059572338 2.9953512466846592 7 76.78795592609336 1.5657043850782002 16.85468959482506 4.79165009400338 8 68.14410747234709 2.982206295219118 22.046217843374265 6.827468389059519 9 34.46717836583515 18.02851920909107 27.171730302459995 20.33257212261378 10 27.130258223112996 19.226892533473546 36.643807709247255 16.999041534166203 11 25.86921597882838 15.29339919713935 37.773933997792035 21.063450826240235 12 21.70493415882982 17.055938316708932 40.06712171157939 21.17200581288186 13 17.216830582432912 20.819856928602057 39.88459605709663 22.078716431868408 14 16.516898295909836 21.167058266573797 40.472286949925014 21.84375648759136 15 19.10562914357003 16.400339925534578 42.322814785208585 22.171216145686806 16 18.017799525423598 21.166767234438026 38.20116917310009 22.61426406703828 17 18.67955809680505 21.83269726643216 37.81429045395193 21.673454182810868 18 19.898061143911512 26.920036010376265 35.12107906955086 18.060823776161364 19 19.861003051956995 22.33002268110445 34.596493644828264 23.21248062211029 20 19.125128296666517 26.277534065311492 35.74849584891164 18.848841789110356 21 16.879766863857107 20.739823091265738 36.5914704301649 25.78893961471226 22 17.4772558385897 24.075827452867347 34.33645643151917 24.11046027702379 23 18.179613392910845 22.576429889388386 38.71052391605081 20.53343280164996 24 22.980285483123048 20.39790883709379 34.59562054842096 22.026185131362205 25 18.017702514711676 21.973459809432157 36.08163063365456 23.9272070422016 26 17.391546874605893 20.560692811700267 36.60015288888199 25.447607424811846 27 21.292056568886338 21.56926467820577 37.01026567353567 20.128413079372223 28 20.037950590504202 22.77268255960823 33.62735663271938 23.56201021716818 29 22.542573150927325 21.05336171220026 35.005830343786556 21.39823479308585 30 22.72631143930913 21.8796504510028 34.32985970310842 21.064178406579654 31 23.561137120760876 20.702959020735072 31.52697770887861 24.20892614962544 32 21.606080243380475 21.967833188140634 32.201153651386186 24.224932917092705 33 18.345647226366737 22.94662276608583 34.035335181710764 24.67239482583667 34 18.3278457607289 21.952651011724715 35.14028719051158 24.579216037034808 35 19.206956832173407 26.15263277371087 30.723777519513707 23.916632874602016 36 18.22472337395495 25.373685262326667 31.40052424588723 25.00106711783115 37 18.532392846818148 26.01798190556201 33.208658400060536 22.240966847559307 38 16.633311150217207 22.52748798522333 30.927257487771797 29.911943376787665 39 20.675553494616874 19.98192690436878 34.63442483319008 24.708094767824264 40 17.169052806810928 19.148459372883952 37.269672317217264 26.41281550308785 41 19.115475730830198 23.701899663760873 31.563550747273517 25.619073858135415 42 18.162442496900507 19.060179625034195 34.40227819955879 28.375099678506498 43 21.421032310387712 21.713034553275374 33.151179553246266 23.714753583090644 44 20.119827631367055 22.575217255489353 34.10047787476693 23.20447723837666 45 21.021348177265732 21.52721053458723 33.1508885211105 24.30055276703654 46 21.452609297118588 20.76611299419682 32.86397934059879 24.917298368085806 47 17.810972687604163 22.899136022599613 34.2430351159375 25.046856173858718 48 19.27195400916169 20.83241981579606 31.43670924143444 28.45891693360781 49 19.384971488551766 18.173647234127593 36.16030632102397 26.281074956296674 50 18.598990700553156 18.784766213885337 37.024720269612175 25.591522815949336 51 17.544969315511818 17.353712696956 36.1980919933179 28.90322599421428 52 15.665774814855057 18.531956298614492 39.0462294846597 26.75603940187076 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 445.0 1 2341.0 2 4237.0 3 66556.0 4 128875.0 5 73349.0 6 17823.0 7 16775.5 8 15728.0 9 15539.0 10 15350.0 11 15061.5 12 14773.0 13 14197.5 14 12723.5 15 11825.0 16 11150.5 17 10476.0 18 9681.5 19 8887.0 20 8434.5 21 7982.0 22 7727.0 23 7472.0 24 7390.5 25 7309.0 26 7983.0 27 8657.0 28 9259.0 29 9861.0 30 10996.5 31 12132.0 32 14385.0 33 16638.0 34 19189.5 35 21741.0 36 24948.5 37 28156.0 38 30336.5 39 36950.0 40 41383.0 41 49198.0 42 57013.0 43 72278.0 44 87543.0 45 110620.0 46 133697.0 47 169645.5 48 205594.0 49 225236.0 50 244878.0 51 229486.0 52 214094.0 53 181685.0 54 149276.0 55 132477.0 56 115678.0 57 103190.5 58 90703.0 59 83778.0 60 76853.0 61 71277.5 62 65702.0 63 64272.0 64 50192.0 65 37542.0 66 30652.0 67 23762.0 68 20038.0 69 16314.0 70 14512.5 71 12711.0 72 14366.5 73 16022.0 74 12388.5 75 8755.0 76 6214.0 77 3673.0 78 2671.0 79 1669.0 80 1225.0 81 781.0 82 566.0 83 351.0 84 257.5 85 164.0 86 130.0 87 96.0 88 53.0 89 9.0 90 8.0 91 5.0 92 2.0 93 2.0 94 2.0 95 1.5 96 1.0 97 1.5 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2061628.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.791565434089495 #Duplication Level Percentage of deduplicated Percentage of total 1 75.35755076769992 23.203769554163532 2 10.425146589051527 6.4201316671351 3 3.781628889285577 3.4932682017564014 4 1.8798378912717777 2.3153260573830305 5 1.0940042950321358 1.6843052417828477 6 0.7613910834217437 1.4066654019667748 7 0.5797982049977628 1.2497026057429372 8 0.494950799710964 1.2192247948764057 9 0.40320940643872544 1.1173903939798562 >10 4.733588794111411 31.6622111144446 >50 0.34420168000618917 7.00989913184346 >100 0.13279276610997845 7.263152561777949 >500 0.00587009087878387 1.1836635766639403 >1k 0.004918184249791891 3.049826692311451 >5k 6.34604419327986E-4 1.3536167579769345 >10k+ 4.7595331449598946E-4 6.367846246194715 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 102724 4.982664185779393 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 16351 0.7931110753249374 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 11277 0.5469948991767671 No Hit CCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGCT 9057 0.4393130089424474 TruSeq Adapter, Index 20 (95% over 22bp) CTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGCTT 7433 0.3605403108611253 TruSeq Adapter, Index 22 (95% over 23bp) CGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC 6141 0.2978713909589897 TruSeq Adapter, Index 22 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGCT 5078 0.2463101975720159 TruSeq Adapter, Index 20 (95% over 22bp) CGTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCT 4493 0.21793456433459382 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 4049 0.19639818628772987 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTC 4041 0.19601014344003864 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 3968 0.19246925245485605 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 2999 0.14546756252825438 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTT 2997 0.14537055181633157 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCG 2916 0.14144161798345772 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA 2789 0.13528143777635926 No Hit CGTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTG 2487 0.12063282027601488 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 2382 0.11553975790006732 No Hit TCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGCT 2327 0.11287196332219003 TruSeq Adapter, Index 20 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3733942301908977 0.0 2 0.0 0.0 0.0 1.2577923854351998 0.0 3 0.0 0.0 0.0 2.150872999396593 0.0 4 0.0 0.0 0.0 2.6959761896908656 0.0 5 0.0 0.0 0.0 5.456513008166362 0.0 6 0.0 0.0 0.0 6.413184143793158 0.0 7 0.0 0.0 0.0 9.004049227115658 0.0 8 0.0 0.0 0.0 11.688432636731747 0.0 9 0.0 0.0 0.0 14.405751183045632 0.0 10 0.0 0.0 0.0 15.963597700458084 0.0 11 0.0 0.0 0.0 17.187339326008377 0.0 12 0.0 0.0 0.0 18.09928852343876 0.0 13 0.0 0.0 0.0 18.552959117745782 0.0 14 0.0 0.0 0.0 18.871639306412213 0.0 15 0.0 0.0 0.0 19.7402247156131 0.0 16 0.0 0.0 0.0 20.65561779331674 0.0 17 0.0 0.0 0.0 21.77575197853347 0.0 18 0.0 0.0 0.0 22.360338528580325 0.0 19 0.0 0.0 0.0 23.020981476774665 0.0 20 0.0 0.0 0.0 23.781011899333926 0.0 21 0.0 0.0 0.0 24.513685301130952 0.0 22 0.0 0.0 0.0 25.290741103632662 0.0 23 0.0 0.0 0.0 25.941391948498953 0.0 24 0.0 0.0 0.0 26.500222154530302 0.0 25 4.850535596140526E-5 0.0 0.0 27.01893843118157 0.0 26 4.850535596140526E-5 0.0 0.0 27.563459557204308 0.0 27 4.850535596140526E-5 0.0 0.0 28.139703186025802 0.0 28 4.850535596140526E-5 0.0 0.0 28.70784642040174 0.0 29 4.850535596140526E-5 0.0 0.0 29.286224284885538 0.0 30 4.850535596140526E-5 0.0 0.0 29.817260921951 0.0 31 4.850535596140526E-5 0.0 0.0 30.31002683316292 0.0 32 4.850535596140526E-5 0.0 0.0 30.87690892828386 0.0 33 4.850535596140526E-5 0.0 0.0 31.412505068809697 0.0 34 4.850535596140526E-5 0.0 0.0 32.025467252093975 0.0 35 4.850535596140526E-5 0.0 0.0 32.50848358675765 0.0 36 4.850535596140526E-5 0.0 0.0 33.02365897242373 0.0 37 4.850535596140526E-5 0.0 0.0 33.58481743554123 0.0 38 4.850535596140526E-5 0.0 0.0 34.22135322182275 0.0 39 4.850535596140526E-5 0.0 0.0 34.86652296146541 0.0 40 9.701071192281052E-5 0.0 0.0 35.475798737696614 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 26445 0.0 45.425976 1 TACGGGT 225 0.0 44.97778 3 TCACGAC 490 0.0 44.122448 24 CGACGGT 460 0.0 43.5 27 CTAGCGG 365 0.0 42.219177 1 CGGGTAC 535 0.0 42.13084 5 TACGCGG 175 0.0 42.057144 1 CGTTCAG 1460 0.0 41.746574 38 ACGGGTA 215 0.0 41.720932 4 ACCCGCA 4460 0.0 41.56502 31 TACGGGA 515 0.0 41.53398 3 CCCGCAC 4460 0.0 41.513454 32 GCACTTA 4430 0.0 41.48307 35 TCGGCGT 1660 0.0 41.42771 4 CGCACTT 4450 0.0 41.4 34 GTCGGCG 1650 0.0 41.4 3 ATAACGG 100 0.0 41.399998 1 GTTTTTT 29155 0.0 41.353455 2 CCGCACT 4440 0.0 41.337837 33 GTTGATC 1845 0.0 41.262875 15 >>END_MODULE