##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043280_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2486286 Sequences flagged as poor quality 0 Sequence length 52 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.33897266847016 33.0 31.0 34.0 31.0 34.0 2 32.673417297929525 34.0 31.0 34.0 31.0 34.0 3 32.77735103684773 34.0 31.0 34.0 31.0 34.0 4 36.217190218663504 37.0 37.0 37.0 35.0 37.0 5 36.154443213693035 37.0 37.0 37.0 35.0 37.0 6 36.31910367512024 37.0 37.0 37.0 35.0 37.0 7 36.25431587516481 37.0 37.0 37.0 35.0 37.0 8 36.23665217919419 37.0 37.0 37.0 35.0 37.0 9 37.82425392734384 39.0 38.0 39.0 35.0 39.0 10 37.65056916219614 39.0 37.0 39.0 35.0 39.0 11 37.34028667659312 39.0 37.0 39.0 35.0 39.0 12 37.3449060164438 39.0 37.0 39.0 35.0 39.0 13 37.296175902530926 39.0 37.0 39.0 34.0 39.0 14 38.64220769452911 40.0 38.0 41.0 35.0 41.0 15 38.709908675027734 41.0 38.0 41.0 35.0 41.0 16 38.60739472450072 41.0 38.0 41.0 34.0 41.0 17 38.57870011736381 40.0 38.0 41.0 34.0 41.0 18 38.33938332114648 40.0 38.0 41.0 34.0 41.0 19 38.082024754996006 40.0 37.0 41.0 34.0 41.0 20 37.75823738701018 40.0 35.0 41.0 34.0 41.0 21 37.69455243684757 39.0 35.0 41.0 34.0 41.0 22 37.64720631496135 39.0 35.0 41.0 34.0 41.0 23 37.655996534590145 39.0 35.0 41.0 34.0 41.0 24 37.57137352661761 39.0 35.0 41.0 34.0 41.0 25 37.47093214537668 39.0 35.0 41.0 34.0 41.0 26 37.38304161307267 39.0 35.0 41.0 33.0 41.0 27 37.399149172701776 39.0 35.0 41.0 34.0 41.0 28 37.326011569063255 39.0 35.0 41.0 33.0 41.0 29 37.23072245107763 39.0 35.0 41.0 33.0 41.0 30 37.16174285661425 39.0 35.0 41.0 33.0 41.0 31 36.95790870398659 39.0 35.0 41.0 33.0 41.0 32 36.70561431790229 39.0 35.0 41.0 32.0 41.0 33 36.262521286770706 39.0 35.0 41.0 30.0 41.0 34 35.99171052726838 39.0 35.0 41.0 30.0 41.0 35 35.79432856879699 39.0 35.0 41.0 29.0 41.0 36 35.797740485205644 39.0 35.0 41.0 29.0 41.0 37 35.7587795611607 39.0 35.0 41.0 29.0 41.0 38 35.688445335733704 38.0 35.0 41.0 29.0 41.0 39 35.678562723677004 38.0 35.0 41.0 29.0 41.0 40 35.628033138585025 38.0 35.0 41.0 29.0 41.0 41 35.57093793714802 38.0 35.0 41.0 29.0 41.0 42 35.47024035046652 38.0 35.0 41.0 28.0 41.0 43 35.3467819068281 38.0 35.0 41.0 27.0 41.0 44 35.16360265874481 37.0 35.0 40.0 26.0 41.0 45 35.06053125022624 37.0 35.0 40.0 25.0 41.0 46 35.02259072367379 37.0 35.0 40.0 25.0 41.0 47 34.93367738063923 37.0 35.0 40.0 25.0 41.0 48 34.83696203896093 37.0 35.0 40.0 25.0 41.0 49 34.786189119031356 36.0 35.0 40.0 26.0 41.0 50 34.68762765023815 36.0 35.0 40.0 25.0 41.0 51 34.572187994462425 36.0 35.0 40.0 24.0 41.0 52 34.20100020673406 35.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 4.0 12 2.0 13 8.0 14 23.0 15 54.0 16 85.0 17 250.0 18 507.0 19 1045.0 20 1937.0 21 3192.0 22 5124.0 23 8089.0 24 13813.0 25 24847.0 26 37932.0 27 45217.0 28 46857.0 29 45732.0 30 46571.0 31 51820.0 32 60274.0 33 75881.0 34 167467.0 35 226579.0 36 233319.0 37 225160.0 38 343378.0 39 819601.0 40 1518.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.001283842647222 16.70009001377959 23.210885634235158 32.087740509338026 2 36.80099554114048 18.773624595078765 22.63110519063374 21.794274673147015 3 25.159977572974306 20.09245919415546 34.877765470263675 19.869797762606556 4 22.525083598588417 22.420349066841062 33.531419957317866 21.52314737725266 5 21.114787277087192 30.446617967522645 30.2589082671905 18.179686488199668 6 75.92002689956023 1.9593079798542887 19.08831083793256 3.032354282652921 7 75.38473047750742 1.7923923474612333 17.827957041144906 4.994920133886447 8 66.16853411071776 3.4825840631367426 23.140620186092832 7.2082616400526724 9 38.960924044940924 15.96244358050522 27.52857072758323 17.548061646970623 10 26.838666187236704 15.067856232147067 37.964578491774475 20.128899088841752 11 24.436569244246236 12.465661633456488 41.36587665296752 21.731892469329754 12 20.909983807172626 13.52366541902259 43.52226574094855 22.044085032856238 13 16.736610349734505 16.61964874515643 45.01384796439348 21.62989294071559 14 16.634007511605663 17.05226188781178 44.64486386521905 21.66886673536351 15 20.10520913523223 14.656801349482723 43.97056493098541 21.267424584299636 16 19.17659513024648 18.80033109626165 40.470927318900564 21.552146454591306 17 19.822216752215958 19.7143450109923 40.000748103798195 20.46269013299355 18 20.095837727437633 25.334132919543446 36.40844215025946 18.161587202759456 19 21.20777738361556 21.391505241150856 35.16292976753278 22.237787607700803 20 20.57140650753775 25.18889620904433 35.60772976238454 18.63196752103338 21 18.3503426395837 20.229048468277583 36.86092428626473 24.559684605873983 22 19.602410985703173 22.019027577680124 34.78598198276465 23.59257945385205 23 20.135776817309033 19.740206878854647 37.6576146107085 22.46640169312782 24 22.943337974794535 18.370131191665 34.52519138988837 24.161339443652096 25 17.9964010576418 19.264356554314347 37.44271576158174 25.296526626462118 26 17.787897289370573 18.163477572572102 37.22713316167167 26.82149197638566 27 21.358846086089855 19.781674352829885 36.76853748925104 22.090942071829225 28 22.570532915360502 20.653939249145107 33.603455113369904 23.172072722124486 29 21.51787847415784 18.08279498014307 36.009735002328775 24.38959154337031 30 25.878237660510493 17.47011405767478 32.873732145054916 23.77791613675981 31 24.603846862348096 17.345550753211818 33.43859073332674 24.612011651113345 32 24.70307116719476 17.15538759418667 32.77933431632564 25.36220692229293 33 20.634311579601057 17.9106104446552 36.11169431030863 25.34338366543511 34 20.80874847061038 19.234472623020842 37.62467391120732 22.33210499516146 35 20.470492936049997 22.898612629440056 34.89691049219599 21.73398394231396 36 20.92892772593338 20.782403955136296 33.69278514217592 24.595883176754405 37 19.608041874506796 24.576979478627962 34.10625326289896 21.708725383966286 38 18.984340498237128 21.758679411781266 32.62609369959852 26.630886390383086 39 20.500135543537628 20.176681202403906 34.71507300447334 24.608110249585124 40 18.084645129321405 19.297216812546907 35.78309172798303 26.835046330148664 41 19.556760565759532 22.336046617323994 31.73062149728551 26.37657131963097 42 19.547228275427685 17.917608835025415 34.398094185463776 28.137068704083116 43 21.936374174169828 18.771372239557316 35.21030967475182 24.08194391152104 44 21.304668891672158 19.1801345460659 35.41507292403207 24.100123638229874 45 21.64726825473819 20.276146831056444 34.08421235529621 23.992372558909153 46 21.962799130912533 19.039281884706746 34.029351410095224 24.9685675742855 47 19.754605865938192 20.11208686369951 35.23778036798662 24.89552690237567 48 20.927640665635412 18.2339843445203 32.59608910640208 28.242285883442207 49 20.066114678681373 16.589241945616877 37.043204200964816 26.301439174736934 50 19.593079798542888 16.8415057640191 37.95150678562321 25.61390765181479 51 18.236679127019176 15.72795728246871 37.30479920652733 28.730564383984785 52 16.16712638851685 16.628497284704977 40.56882434281495 26.63555198396323 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 456.0 1 3032.5 2 5609.0 3 87271.0 4 168933.0 5 96544.5 6 24156.0 7 21853.0 8 19550.0 9 19152.5 10 18755.0 11 18104.0 12 17453.0 13 16474.0 14 14347.5 15 13200.0 16 12471.0 17 11742.0 18 10923.0 19 10104.0 20 9813.0 21 9522.0 22 9210.0 23 8898.0 24 8957.0 25 9016.0 26 10103.5 27 11191.0 28 11772.5 29 12354.0 30 13057.5 31 13761.0 32 15757.0 33 17753.0 34 20885.5 35 24018.0 36 26222.0 37 28426.0 38 31250.0 39 36703.5 40 39333.0 41 46082.5 42 52832.0 43 66670.5 44 80509.0 45 103926.0 46 127343.0 47 166378.0 48 205413.0 49 232146.5 50 258880.0 51 250992.5 52 243105.0 53 213436.5 54 183768.0 55 166415.0 56 149062.0 57 136957.0 58 124852.0 59 120233.0 60 115614.0 61 112204.0 62 108794.0 63 106630.0 64 88038.5 65 71611.0 66 59542.0 67 47473.0 68 39099.0 69 30725.0 70 26035.5 71 21346.0 72 21445.5 73 21545.0 74 16842.5 75 12140.0 76 9165.5 77 6191.0 78 4790.5 79 3390.0 80 2602.0 81 1814.0 82 1324.5 83 835.0 84 628.5 85 422.0 86 310.5 87 199.0 88 130.0 89 66.5 90 72.0 91 40.0 92 8.0 93 12.0 94 16.0 95 8.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2486286.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.97717665512254 #Duplication Level Percentage of deduplicated Percentage of total 1 74.8408816091171 23.183592106307323 2 9.677072037518867 5.9953674002113715 3 3.595375585295324 3.3412375394162357 4 1.9239442525268717 2.3839344394053037 5 1.250498272433032 1.9368452946041794 6 0.9004226693137777 1.6735531254965927 7 0.7661557576189514 1.661333957437105 8 0.6454103743123524 1.5994392944098001 9 0.5720903820332063 1.5949570344245256 >10 5.4364920868782765 32.38002214547933 >50 0.23538810082945247 4.979194214335134 >100 0.14480134973250428 7.976705935962748 >500 0.00586407394961802 1.203750266187223 >1k 0.004691259159694416 2.9204466971108993 >5k 6.5156377217978E-4 1.5355283828134063 >10k+ 2.60625508871912E-4 5.634092166398958 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 125444 5.0454372505817915 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 14127 0.568196900919685 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 9659 0.3884911068155473 No Hit CCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGCT 9471 0.3809296275649704 TruSeq Adapter, Index 23 (95% over 24bp) CTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGCTT 7735 0.3111066064000682 TruSeq Adapter, Index 22 (95% over 23bp) CGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC 5978 0.24043895191462283 TruSeq Adapter, Index 22 (95% over 21bp) CGTTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCT 5196 0.20898641588296762 No Hit CGTTTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTC 4541 0.18264190040888298 No Hit GCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGCT 4469 0.17974601473844923 TruSeq Adapter, Index 23 (95% over 24bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCG 3944 0.15863018172486995 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTT 3636 0.14624222635690343 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 3426 0.13779589315147173 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 3364 0.13530221382415378 No Hit GGGCCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCT 3057 0.12295447909049884 TruSeq Adapter, Index 23 (95% over 21bp) CGTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTG 3015 0.12126521244941249 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCT 2640 0.10618247458257014 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA 2551 0.10260283812883957 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3211617649779631 0.0 2 0.0 0.0 0.0 1.036606408112341 0.0 3 0.0 0.0 0.0 1.7530565671045084 0.0 4 0.0 0.0 0.0 2.262652003832222 0.0 5 0.0 0.0 0.0 4.659721367533743 0.0 6 0.0 0.0 0.0 5.744471874917045 0.0 7 0.0 0.0 0.0 8.522390424914914 0.0 8 0.0 0.0 0.0 11.6195803700781 0.0 9 0.0 0.0 0.0 14.685599323649813 0.0 10 0.0 0.0 0.0 16.368792648955107 0.0 11 0.0 0.0 0.0 17.692493944783504 0.0 12 0.0 0.0 0.0 18.592068651796293 0.0 13 0.0 0.0 0.0 19.074877146072495 0.0 14 0.0 0.0 0.0 19.380513746206187 0.0 15 0.0 0.0 0.0 20.070699830992893 0.0 16 4.02206343115796E-5 0.0 0.0 20.815746860980596 0.0 17 4.02206343115796E-5 0.0 0.0 21.750957049993445 0.0 18 4.02206343115796E-5 0.0 0.0 22.29293009734198 0.0 19 8.04412686231592E-5 0.0 0.0 22.90939175943556 0.0 20 8.04412686231592E-5 0.0 0.0 23.56816552882492 0.0 21 2.0110317155789802E-4 0.0 0.0 24.28690826397285 0.0 22 2.4132380586947761E-4 0.0 0.0 24.936431287470548 0.0 23 2.4132380586947761E-4 0.0 0.0 25.51778033581012 0.0 24 3.217650744926368E-4 0.0 0.0 25.990694554045675 0.0 25 3.217650744926368E-4 0.0 0.0 26.46469472940764 0.0 26 3.217650744926368E-4 0.0 0.0 26.949393593496485 0.0 27 3.217650744926368E-4 0.0 0.0 27.473267355404808 0.0 28 3.217650744926368E-4 0.0 0.0 27.97646771127698 0.0 29 3.217650744926368E-4 0.0 0.0 28.47830056558256 0.0 30 3.217650744926368E-4 0.0 0.0 28.937016899906126 0.0 31 3.217650744926368E-4 0.0 0.0 29.39625610247574 0.0 32 3.217650744926368E-4 0.0 0.0 29.906816834426934 0.0 33 3.6198570880421644E-4 0.0 0.0 30.392521214373566 0.0 34 3.6198570880421644E-4 0.0 0.0 30.92166387937671 0.0 35 4.0220634311579603E-4 0.0 0.0 31.409178187867365 0.0 36 4.0220634311579603E-4 0.0 0.0 31.912820970716965 0.0 37 4.4242697742737563E-4 0.0 0.0 32.54102705802953 0.0 38 4.4242697742737563E-4 0.0 0.0 33.20700032096066 0.0 39 4.4242697742737563E-4 0.0 0.0 33.893285004219145 0.0 40 4.4242697742737563E-4 0.0 0.0 34.510349975827395 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGGTA 20 6.312878E-4 46.0 3 CGTTTTT 32825 0.0 45.348362 1 TATACGG 175 0.0 43.37143 1 TCGGCGT 1395 0.0 42.20789 4 GGCGATT 460 0.0 42.0 7 AGGGCGA 1075 0.0 41.934883 5 ACGGGAT 490 0.0 41.775513 4 CACGACG 525 0.0 41.619045 25 TAGTAGG 505 0.0 41.44554 1 CACTTAC 3765 0.0 41.418324 36 TACGGGA 445 0.0 41.348312 3 CGGTCTA 535 0.0 41.271027 30 GTTTTTT 36820 0.0 40.94025 2 ACGGTCT 535 0.0 40.84112 29 TCACGAC 550 0.0 40.563637 24 CTCACGA 550 0.0 40.563637 23 GCACTTA 3845 0.0 40.556564 35 CGACGGT 540 0.0 40.462963 27 AGCACGG 370 0.0 40.405407 1 CCTACGG 120 0.0 40.25 1 >>END_MODULE