SRR1043279_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043279_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2438543
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	120404	4.937538521978083	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	13366	0.5481141812959625	No Hit
CCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	9277	0.38043208588079025	TruSeq Adapter, Index 23 (95% over 23bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	8277	0.3394239921133234	No Hit
CTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGCT	7465	0.3061254199741403	TruSeq Adapter, Index 22 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTG	5723	0.23468932063121298	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTC	5032	0.20635272783789335	No Hit
GCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	4456	0.18273206582783244	TruSeq Adapter, Index 23 (95% over 23bp)
CGTTTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTT	4386	0.17986149926410977	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCC	3677	0.15078676078297573	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCT	3345	0.13717207365217673	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3302	0.13540872562017567	No Hit
GGGCCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTC	3269	0.13405545852584924	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3260	0.13368638568194205	No Hit
CGTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCT	2941	0.1206048037701201	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	31760	44.369488	1
CGGGTAT	145	43.448273	5
CACGACG	380	42.631577	25
CGGGATA	235	42.12766	5
ACGGGTA	170	41.02941	4
CACTTAC	3465	40.974026	36
TCGGCGT	1440	40.468754	4
GTTTTTT	35615	40.223923	2
CGCACTT	3535	40.09901	34
CGACGGT	400	39.9375	27
ACCCGCA	3600	39.9375	31
CCCGCAC	3625	39.910347	32
CATGCGG	350	39.857143	1
ACTTACT	3535	39.844414	37
CCGCACT	3555	39.746834	33
TACGCGG	380	39.67105	1
CTTACTG	3540	39.661015	38
GCACTTA	3575	39.650352	35
TCACGAC	415	39.578316	24
ACGGGAT	495	39.545452	4