##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043279_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2438543 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.30604381386755 33.0 31.0 34.0 31.0 34.0 2 32.613349036699375 34.0 31.0 34.0 31.0 34.0 3 32.69755874716993 34.0 31.0 34.0 31.0 34.0 4 36.18887671859795 37.0 37.0 37.0 35.0 37.0 5 36.1752919673756 37.0 37.0 37.0 35.0 37.0 6 36.338709221038954 37.0 37.0 37.0 35.0 37.0 7 36.28594082614086 37.0 37.0 37.0 35.0 37.0 8 36.19147253093343 37.0 37.0 37.0 35.0 37.0 9 37.78859384476714 39.0 38.0 39.0 35.0 39.0 10 37.600254332197544 39.0 37.0 39.0 35.0 39.0 11 37.338769092855856 39.0 37.0 39.0 35.0 39.0 12 37.3472270121954 39.0 37.0 39.0 35.0 39.0 13 37.313410097750996 39.0 37.0 39.0 35.0 39.0 14 38.65681761609289 40.0 38.0 41.0 35.0 41.0 15 38.73328499846015 41.0 38.0 41.0 35.0 41.0 16 38.66546335250188 41.0 38.0 41.0 34.0 41.0 17 38.615004943525705 40.0 38.0 41.0 34.0 41.0 18 38.39528644768618 40.0 38.0 41.0 34.0 41.0 19 38.157653566084335 40.0 37.0 41.0 34.0 41.0 20 37.85981137097029 40.0 35.0 41.0 34.0 41.0 21 37.80079375266296 40.0 35.0 41.0 34.0 41.0 22 37.77028701154747 40.0 35.0 41.0 34.0 41.0 23 37.73961951870441 40.0 35.0 41.0 34.0 41.0 24 37.66486627465663 39.0 35.0 41.0 34.0 41.0 25 37.62799876811686 39.0 35.0 41.0 34.0 41.0 26 37.595432190451426 39.0 35.0 41.0 34.0 41.0 27 37.56066429831256 39.0 35.0 41.0 34.0 41.0 28 37.45967366579142 39.0 35.0 41.0 34.0 41.0 29 37.385286624020985 39.0 35.0 41.0 34.0 41.0 30 37.264450124521076 39.0 35.0 41.0 33.0 41.0 31 37.047378291053306 39.0 35.0 41.0 33.0 41.0 32 36.7994966666571 39.0 35.0 41.0 33.0 41.0 33 36.34837072793057 39.0 35.0 41.0 31.0 41.0 34 36.045843768184525 39.0 35.0 41.0 30.0 41.0 35 35.846774077799736 39.0 35.0 41.0 30.0 41.0 36 35.82189856812039 39.0 35.0 41.0 29.0 41.0 37 35.73475595878359 38.0 35.0 41.0 29.0 41.0 38 35.659761177063515 38.0 35.0 41.0 29.0 41.0 39 35.60237322040251 38.0 35.0 41.0 28.0 41.0 40 35.52452673584185 38.0 35.0 41.0 28.0 41.0 41 35.43303029718976 38.0 35.0 41.0 27.0 41.0 42 35.31587468418642 38.0 35.0 40.0 27.0 41.0 43 35.17666409819306 38.0 35.0 40.0 26.0 41.0 44 35.060929825719704 37.0 35.0 40.0 26.0 41.0 45 34.982882811580524 37.0 35.0 40.0 25.0 41.0 46 34.88676599100364 37.0 35.0 40.0 24.0 41.0 47 34.74334100321381 37.0 35.0 40.0 24.0 41.0 48 34.6706348832069 36.0 35.0 40.0 24.0 41.0 49 34.60664257304464 36.0 35.0 40.0 24.0 41.0 50 34.53648223549882 36.0 34.0 40.0 24.0 41.0 51 34.13053450359497 35.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 6.0 14 15.0 15 43.0 16 104.0 17 195.0 18 475.0 19 936.0 20 1723.0 21 2791.0 22 4469.0 23 7019.0 24 11811.0 25 21289.0 26 34802.0 27 44632.0 28 47190.0 29 45618.0 30 46183.0 31 50568.0 32 58002.0 33 73328.0 34 163219.0 35 225311.0 36 222596.0 37 221771.0 38 359262.0 39 795041.0 40 143.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.17752239759561 16.788795604588476 23.282140196010488 31.751541801805423 2 36.4856391706031 18.879183184385102 22.65697180652545 21.978205838486343 3 25.222356136430648 20.08785574008742 34.69735821759141 19.99242990589053 4 22.68711275544454 22.559946656671627 33.127445363891475 21.62549522399236 5 21.26954497009075 30.54701106357362 29.926066507746636 18.257377458589 6 76.27283997042497 1.9236486705381042 18.76218709286652 3.041324266170414 7 75.74506580363767 1.7606414978124232 17.504345832737005 4.989946865812906 8 66.4697321310307 3.4200340121129704 22.833880723038305 7.276353133818021 9 39.13771461073272 15.916102361123013 27.24684370954295 17.69933931860131 10 27.160644696443736 15.024258337868146 37.71309343325092 20.102003532437195 11 24.64471612762211 12.433202941264518 41.15711718021786 21.764963750895514 12 21.073321241413417 13.435563777222711 43.396282124202855 22.094832857161016 13 16.808192432940487 16.570017424339042 44.8521104610417 21.76967968167877 14 16.689761058140046 17.000233336053537 44.51563905167963 21.79436655412679 15 20.115700235755533 14.685531483348868 43.860780802306955 21.337987478588648 16 19.324982171731232 18.760136688178143 40.331214171741074 21.583666968349544 17 19.969711421943348 19.661658621562136 39.90415588324668 20.46447407324784 18 20.163884745932304 25.47570413972606 36.23721213855979 18.12319897578185 19 21.360911003004663 21.470730678113938 34.87980322676287 22.288555092118532 20 20.535869164496997 25.417308614201183 35.34922287611906 18.69759934518276 21 18.427930120567897 20.31614779809091 36.60566986106048 24.650252220280716 22 19.688436906792294 22.079700870560824 34.41735495334714 23.814507269299742 23 20.18471685756618 19.789439841741565 37.39917647546096 22.626666825231297 24 23.06389512098003 18.352844300879664 34.347354137286075 24.235906440854233 25 17.864150847452763 19.28914109777847 37.390851832426165 25.455856222342604 26 17.78717865545123 18.080550558263685 37.07299809763453 27.05927268865056 27 21.454204416325652 19.8048998930919 36.636836012323755 22.104059678258697 28 22.610878709130823 20.69916339387905 33.35024233733012 23.33971555966001 29 21.550819485241803 18.161746583923268 35.67761569100894 24.609818239825994 30 26.03193792358798 17.444309983461437 32.51753198528793 24.00622010766265 31 24.817524234758213 17.26506360560384 33.161523089812235 24.755889069825713 32 24.862674145996195 17.040052195101747 32.522616988915104 25.574656669986958 33 20.756738757528574 17.78320087035578 35.85321234852123 25.60684802359442 34 20.93664126488645 19.15717705203476 37.560133243498264 22.34604843958052 35 20.515775198550937 22.809480907246662 34.84974429403132 21.824999600171086 36 20.912118424813507 20.707529045007615 33.66391324655748 24.71643928362141 37 19.595020469190004 24.42278032415258 34.13234870166325 21.84985050499417 38 19.031815309387614 21.69348664345882 32.56132862943159 26.713369417721978 39 20.45955310199574 20.187259359379762 34.658195488043475 24.694992050581025 40 18.091048630268155 19.197118935364273 35.704558008614164 27.007274425753415 41 19.62614561235951 22.167048110285528 31.61818348087362 26.588622796481342 42 19.67925109378838 17.79747168698686 34.355514747945804 28.167762471278955 43 22.09446378431711 18.582448617883713 35.091569022978064 24.231518574821113 44 21.25133737645799 19.056584198023163 35.45104597294368 24.241032452575165 45 21.66551912350941 20.111435394003717 34.04787202850226 24.175173453984613 46 22.151875115591565 18.89398710623516 34.04815908515864 24.905978693014642 47 20.001164629863 19.8785094214045 35.15217898556638 24.96814696316612 48 21.012219181699894 18.04192093393473 32.4645085200466 28.481351364318776 49 20.199479771322466 16.43793035431403 36.982616258971035 26.379973615392473 50 19.758806795697268 16.658758939251843 37.86511043684692 25.717323828203973 51 18.34029582418682 15.669725733768075 37.13738080484945 28.852597637195654 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 377.0 1 2861.5 2 5346.0 3 83471.5 4 161597.0 5 93202.5 6 24808.0 7 22084.5 8 19361.0 9 18799.0 10 18237.0 11 17401.5 12 16566.0 13 15701.0 14 14836.0 15 13837.0 16 12838.0 17 11815.0 18 10792.0 19 10191.5 20 9591.0 21 9282.5 22 8974.0 23 8831.0 24 8688.0 25 8461.5 26 9666.0 27 11097.0 28 11745.0 29 12393.0 30 13494.0 31 14595.0 32 16822.0 33 19049.0 34 22144.5 35 25240.0 36 27552.5 37 29865.0 38 32956.5 39 36048.0 40 40228.5 41 44409.0 42 53288.0 43 62167.0 44 74694.0 45 87221.0 46 118336.0 47 149451.0 48 195838.0 49 242225.0 50 261516.5 51 280808.0 52 246306.5 53 211805.0 54 187226.5 55 162648.0 56 147011.5 57 131375.0 58 125694.5 59 120014.0 60 116796.5 61 113579.0 62 107732.0 63 101885.0 64 96778.5 65 91672.0 66 74801.0 67 57930.0 68 47322.5 69 36715.0 70 30646.0 71 24577.0 72 23029.0 73 21481.0 74 18116.5 75 11143.5 76 7535.0 77 5590.5 78 3646.0 79 2891.0 80 2136.0 81 1582.5 82 1029.0 83 796.0 84 563.0 85 374.0 86 185.0 87 137.0 88 89.0 89 85.5 90 82.0 91 49.0 92 16.0 93 14.5 94 13.0 95 7.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2438543.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.40656361639255 #Duplication Level Percentage of deduplicated Percentage of total 1 73.94228879708173 22.48330908250136 2 9.99966666633557 6.081110012653051 3 3.7075752068020904 3.3820386416456265 4 1.9258081684482606 2.3422883434756185 5 1.2998965487123662 1.9762693551575843 6 1.0034186603739779 1.8306307998322053 7 0.7977441110180434 1.6979659942890863 8 0.7116559544821628 1.7311209642357155 9 0.579065352809483 1.584664873942531 >10 5.631361776053498 32.60295786185024 >50 0.23706945918051386 4.921507730116936 >100 0.1522189706703097 8.189545957898721 >500 0.0063869490834713985 1.2647715232707075 >1k 0.004892131212871709 2.9062184428671944 >5k 6.794626684544041E-4 1.478190613005531 >10k+ 2.717850673817616E-4 5.5274098032579495 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 120404 4.937538521978083 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 13366 0.5481141812959625 No Hit CCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC 9277 0.38043208588079025 TruSeq Adapter, Index 23 (95% over 23bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 8277 0.3394239921133234 No Hit CTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGCT 7465 0.3061254199741403 TruSeq Adapter, Index 22 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTG 5723 0.23468932063121298 No Hit CGTTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTC 5032 0.20635272783789335 No Hit GCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC 4456 0.18273206582783244 TruSeq Adapter, Index 23 (95% over 23bp) CGTTTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTT 4386 0.17986149926410977 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCC 3677 0.15078676078297573 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCT 3345 0.13717207365217673 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3302 0.13540872562017567 No Hit GGGCCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTC 3269 0.13405545852584924 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3260 0.13368638568194205 No Hit CGTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCT 2941 0.1206048037701201 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3156803058219601 0.0 2 0.0 0.0 0.0 1.034511181471887 0.0 3 0.0 0.0 0.0 1.743828179367762 0.0 4 0.0 0.0 0.0 2.262785605995055 0.0 5 0.0 0.0 0.0 4.712814168132364 0.0 6 0.0 0.0 0.0 5.802071154783819 0.0 7 0.0 0.0 0.0 8.617563848576793 0.0 8 0.0 0.0 0.0 11.809305802686277 0.0 9 0.0 0.0 0.0 15.013760265863674 0.0 10 0.0 0.0 0.0 16.755209975792923 0.0 11 0.0 0.0 0.0 18.094411293957087 0.0 12 0.0 0.0 0.0 19.01020404397216 0.0 13 0.0 0.0 0.0 19.509067504653395 0.0 14 0.0 0.0 0.0 19.822943454349584 0.0 15 0.0 0.0 0.0 20.527257464805828 0.0 16 0.0 0.0 0.0 21.30038305660388 0.0 17 0.0 0.0 0.0 22.27141370892373 0.0 18 0.0 0.0 0.0 22.824694910034392 0.0 19 0.0 0.0 0.0 23.456383586428455 0.0 20 4.1008093767466886E-5 0.0 0.0 24.141054719970082 0.0 21 1.2302428130240065E-4 0.0 0.0 24.88026661822244 0.0 22 1.2302428130240065E-4 0.0 0.0 25.54529487484945 0.0 23 1.2302428130240065E-4 0.0 0.0 26.13470420656925 0.0 24 1.6403237506986754E-4 0.0 0.0 26.62265951430834 0.0 25 1.6403237506986754E-4 0.0 0.0 27.106103931733006 0.0 26 1.6403237506986754E-4 0.0 0.0 27.59348512615935 0.0 27 1.6403237506986754E-4 0.0 0.0 28.12347373001009 0.0 28 1.6403237506986754E-4 0.0 0.0 28.619958721252814 0.0 29 1.6403237506986754E-4 0.0 0.0 29.141540665881227 0.0 30 1.6403237506986754E-4 0.0 0.0 29.615717254114443 0.0 31 1.6403237506986754E-4 0.0 0.0 30.084234725407754 0.0 32 1.6403237506986754E-4 0.0 0.0 30.597122954157463 0.0 33 1.6403237506986754E-4 0.0 0.0 31.08864596605432 0.0 34 1.6403237506986754E-4 0.0 0.0 31.61670718949799 0.0 35 1.6403237506986754E-4 0.0 0.0 32.112495043146666 0.0 36 1.6403237506986754E-4 0.0 0.0 32.618452904049676 0.0 37 2.0504046883733444E-4 0.0 0.0 33.251207790881686 0.0 38 2.0504046883733444E-4 0.0 0.0 33.929686702264426 0.0 39 2.0504046883733444E-4 0.0 0.0 34.628546636249595 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 31760 0.0 44.369488 1 CGGGTAT 145 0.0 43.448273 5 CACGACG 380 0.0 42.631577 25 CGGGATA 235 0.0 42.12766 5 ACGGGTA 170 0.0 41.02941 4 CACTTAC 3465 0.0 40.974026 36 TCGGCGT 1440 0.0 40.468754 4 GTTTTTT 35615 0.0 40.223923 2 CGCACTT 3535 0.0 40.09901 34 CGACGGT 400 0.0 39.9375 27 ACCCGCA 3600 0.0 39.9375 31 CCCGCAC 3625 0.0 39.910347 32 CATGCGG 350 0.0 39.857143 1 ACTTACT 3535 0.0 39.844414 37 CCGCACT 3555 0.0 39.746834 33 TACGCGG 380 0.0 39.67105 1 CTTACTG 3540 0.0 39.661015 38 GCACTTA 3575 0.0 39.650352 35 TCACGAC 415 0.0 39.578316 24 ACGGGAT 495 0.0 39.545452 4 >>END_MODULE