SRR1043278_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043278_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1928272
Sequences flagged as poor quality	0
Sequence length	52
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	86297	4.475354099421659	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	11232	0.5824904370337795	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	9172	0.4756590356547209	No Hit
CCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT	7118	0.36913879369715474	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCTT	5350	0.2774504841640599	Illumina Single End Adapter 1 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	3655	0.18954794759245583	No Hit
GCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT	3533	0.18322103935544365	Illumina Single End Adapter 1 (95% over 21bp)
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3381	0.1753383340109694	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3082	0.15983222283993131	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA	2355	0.12213007293576839	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2338	0.12124845457487324	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCT	2321	0.1203668362139781	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCG	2203	0.11424736759129417	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2172	0.1126397105802501	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGACT	20	6.3125225E-4	46.000004	22
CGTAAAC	20	6.3125225E-4	46.000004	44
CGTTTTT	20655	0.0	45.064636	1
TATACGG	105	0.0	43.809525	1
CGGGTAT	145	0.0	42.827583	5
CATGCGG	420	0.0	42.714283	1
TAGTCAG	290	0.0	42.03448	33
CACGACG	405	0.0	42.02469	25
CGGGTAC	400	0.0	41.975	5
ATTGCGG	260	0.0	41.576923	1
CGTTCGA	180	0.0	40.88889	13
GCGCGAC	1515	0.0	40.838284	8
TCACGAC	440	0.0	40.772728	24
GGTACCT	1540	0.0	40.772728	7
CGCACTT	3005	0.0	40.64226	34
ACCCGCA	3040	0.0	40.628292	31
TAGCATA	1275	0.0	40.588238	29
CCCGCAC	3060	0.0	40.588234	32
ACTTACT	2975	0.0	40.433613	37
CACTTAC	3005	0.0	40.336105	36