##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043277_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1884009 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.328100874252726 33.0 31.0 34.0 31.0 34.0 2 32.62749222535561 34.0 31.0 34.0 31.0 34.0 3 32.7319726179652 34.0 31.0 34.0 31.0 34.0 4 36.20674582764732 37.0 37.0 37.0 35.0 37.0 5 36.192923176057015 37.0 37.0 37.0 35.0 37.0 6 36.33925846426423 37.0 37.0 37.0 35.0 37.0 7 36.2919513654128 37.0 37.0 37.0 35.0 37.0 8 36.19813281146746 37.0 37.0 37.0 35.0 37.0 9 37.777487793317334 39.0 38.0 39.0 35.0 39.0 10 37.56631151974327 39.0 37.0 39.0 35.0 39.0 11 37.275396773582294 39.0 37.0 39.0 35.0 39.0 12 37.280618086219334 39.0 37.0 39.0 35.0 39.0 13 37.24425201790437 39.0 37.0 39.0 34.0 39.0 14 38.61805490313475 40.0 38.0 41.0 35.0 41.0 15 38.69102376899473 40.0 38.0 41.0 35.0 41.0 16 38.599484397367526 40.0 38.0 41.0 34.0 41.0 17 38.57987727234849 40.0 38.0 41.0 34.0 41.0 18 38.3675465456906 40.0 37.0 41.0 34.0 41.0 19 38.14644834499198 40.0 37.0 41.0 34.0 41.0 20 37.89873137548706 40.0 35.0 41.0 34.0 41.0 21 37.82243662317961 40.0 35.0 41.0 34.0 41.0 22 37.76449900186252 40.0 35.0 41.0 34.0 41.0 23 37.73023589590071 40.0 35.0 41.0 34.0 41.0 24 37.650700713213155 39.0 35.0 41.0 34.0 41.0 25 37.604582568342295 39.0 35.0 41.0 34.0 41.0 26 37.56117937865477 39.0 35.0 41.0 34.0 41.0 27 37.53168535819096 39.0 35.0 41.0 34.0 41.0 28 37.450151246623555 39.0 35.0 41.0 34.0 41.0 29 37.387456747818085 39.0 35.0 41.0 34.0 41.0 30 37.26262082612132 39.0 35.0 41.0 33.0 41.0 31 37.11363586904309 39.0 35.0 41.0 33.0 41.0 32 36.87586577346499 39.0 35.0 41.0 33.0 41.0 33 36.53302930081544 39.0 35.0 41.0 31.0 41.0 34 36.18855960879168 38.0 35.0 41.0 31.0 41.0 35 36.04908681434112 38.0 35.0 41.0 30.0 41.0 36 35.881161926508845 38.0 35.0 41.0 30.0 41.0 37 35.74337542973521 38.0 35.0 41.0 30.0 41.0 38 35.58274827774177 38.0 35.0 40.0 30.0 41.0 39 35.52858611609605 38.0 35.0 40.0 29.0 41.0 40 35.453999423569634 37.0 35.0 40.0 29.0 41.0 41 35.39781126310968 37.0 35.0 40.0 29.0 41.0 42 35.33204034587945 37.0 35.0 40.0 29.0 41.0 43 35.24294894557298 37.0 35.0 40.0 28.0 41.0 44 35.12317987865239 37.0 35.0 40.0 28.0 41.0 45 35.04907885259571 37.0 35.0 40.0 27.0 41.0 46 34.928217434205465 36.0 35.0 40.0 27.0 41.0 47 34.79106097688493 36.0 35.0 40.0 26.0 41.0 48 34.712856467246176 36.0 35.0 40.0 26.0 41.0 49 34.654161418549485 35.0 34.0 40.0 27.0 41.0 50 34.57991177324524 35.0 34.0 40.0 26.0 41.0 51 34.19981061661595 35.0 34.0 39.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 1.0 11 1.0 12 3.0 13 5.0 14 17.0 15 38.0 16 61.0 17 138.0 18 390.0 19 715.0 20 1259.0 21 2141.0 22 3282.0 23 5166.0 24 8712.0 25 15203.0 26 23920.0 27 29892.0 28 31738.0 29 32381.0 30 33799.0 31 37919.0 32 44529.0 33 59146.0 34 138435.0 35 189596.0 36 176780.0 37 184608.0 38 295431.0 39 568615.0 40 86.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.212386989658757 17.223749992701734 23.154241832178084 30.40962118546143 2 33.801855511305945 20.559562082771365 24.29155062422738 21.34703178169531 3 26.506295882875293 21.11635347814156 33.15228324280829 19.225067396174857 4 23.884864668905507 23.603443507966258 31.196772414569146 21.31491940855909 5 22.26114631087219 31.43366087953932 27.670621531001178 18.634571278587313 6 78.72526086658821 2.1021661786116734 16.380919624056997 2.791653330743112 7 78.54739547422544 2.0615612770427316 15.021371978583966 4.36967127014786 8 69.96410314388095 3.398232174050124 20.029415995358832 6.608248686710096 9 42.70929703626681 15.5220065296928 24.865380154765717 16.903316279274673 10 28.72868441711266 16.908783344453237 33.6514846797441 20.71104755869001 11 25.345844950846836 13.241921880415648 38.95804107092907 22.454192097808452 12 21.09618372311385 15.125883156609124 41.108826974818065 22.669106145458965 13 16.95766846124408 18.414774027087983 42.853086158293294 21.77447135337464 14 17.17942960994348 17.564618852670026 42.46163367584762 22.79431786153888 15 20.933021020600222 14.190218836534221 42.278991236241446 22.59776890662412 16 20.72076088808493 17.99933015181987 37.50688027498807 23.773028685107132 17 21.86815455764808 19.18578945217353 36.58958104764892 22.356474942529466 18 21.649578107110955 24.078865865290453 34.248084802142664 20.02347122545593 19 22.525741649854115 20.670548813726477 33.08227296154105 23.721436574878357 20 21.70058635600998 24.49107196409359 34.334814748761815 19.473526931134618 21 20.11779136936182 19.102244203716648 35.53656060029437 25.24340382662715 22 20.547513308057447 21.27059902580083 33.4238318394445 24.758055826697216 23 21.393581453167158 19.518696566736146 36.56723508221033 22.520486897886368 24 24.090808483398966 17.98255740816525 33.40769603542233 24.51893807301345 25 19.00813637302157 19.540140201028763 35.471964305903 25.979759120046666 26 18.515728958831936 18.622734817084208 35.52950118603467 27.33203503804918 27 21.615395680169254 20.79522974677934 34.7817871358364 22.807587437215002 28 21.985245293414206 21.38296579262626 31.512906785477142 25.1188821284824 29 22.674413975729415 19.14672382138302 33.77117625234274 24.40768595054482 30 26.07147842712004 20.945335186827663 30.039771572216477 22.943414813835815 31 26.122592832624473 18.423425790428816 29.455114067926424 25.998867309020284 32 26.924181360067813 19.250279589959497 28.263771563723957 25.561767486248737 33 22.45610291670581 20.690293942332545 31.761366320436895 25.092236820524743 34 22.787629995398113 21.066088325480397 32.02527164148366 24.121010037637824 35 27.536333425158798 21.729991735708268 28.63760204967174 22.096072789461196 36 26.319301022447345 20.973891313682685 30.519174802243516 22.187632861626458 37 26.52089241611903 23.033276380314533 30.35760444881102 20.088226754755418 38 25.007311536197545 19.389026273229057 30.849162610157382 24.754499580416017 39 26.018506281020954 17.97586954202448 34.16130177722081 21.84432239973376 40 21.334611458862458 18.26949871258577 35.94685588020015 24.449033948351627 41 21.56624517186489 21.745490600097984 30.85680588574683 25.831458342290297 42 21.562901238794506 17.70745256524783 32.8397581964842 27.889887999473462 43 24.179873875337112 18.437597697250915 32.7028692538093 24.679659173602676 44 23.30625809112377 19.74051079373825 32.80345263743432 24.149778477703663 45 24.389108544598248 19.767315336604018 31.74225813146328 24.101317987334454 46 23.846329821142042 19.007658668297232 32.0728298007069 25.073181709853827 47 21.718367587415983 20.510889279191343 33.84224809966407 23.92849503372861 48 23.050526828693492 18.93722376060836 31.35335340754742 26.65889600315073 49 22.309766036149508 16.827414306407242 34.63046089482587 26.232358762617373 50 21.45945162682344 17.925073606336277 35.63751553203833 24.977959234801958 51 20.591515220999476 16.214200675262166 34.937731189182216 28.256552914556142 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 465.0 1 3429.5 2 6394.0 3 56590.5 4 106787.0 5 61255.5 6 15724.0 7 13884.5 8 12045.0 9 11892.0 10 11739.0 11 11435.5 12 11132.0 13 10547.0 14 9962.0 15 9373.0 16 8784.0 17 8067.5 18 7351.0 19 7131.5 20 6912.0 21 6337.5 22 5763.0 23 5659.5 24 5556.0 25 5649.5 26 6704.5 27 7666.0 28 8285.0 29 8904.0 30 10167.0 31 11430.0 32 13589.5 33 15749.0 34 18080.5 35 20412.0 36 21964.5 37 23517.0 38 25572.5 39 27628.0 40 31354.5 41 35081.0 42 41633.0 43 48185.0 44 54684.5 45 61184.0 46 70646.5 47 80109.0 48 104500.5 49 128892.0 50 154049.5 51 179207.0 52 183777.0 53 188347.0 54 170818.0 55 153289.0 56 140568.0 57 127847.0 58 117443.0 59 107039.0 60 101501.5 61 95964.0 62 92084.0 63 88204.0 64 83949.0 65 79694.0 66 67193.5 67 54693.0 68 46670.0 69 38647.0 70 32960.0 71 27273.0 72 25325.0 73 23377.0 74 19957.5 75 13086.5 76 9635.0 77 7581.0 78 5527.0 79 4234.5 80 2942.0 81 2147.5 82 1353.0 83 1039.0 84 725.0 85 554.0 86 383.0 87 266.0 88 149.0 89 92.0 90 35.0 91 23.5 92 12.0 93 12.5 94 13.0 95 7.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1884009.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.077223131661718 #Duplication Level Percentage of deduplicated Percentage of total 1 74.17443800480761 21.567866845314 2 10.397589582255554 6.046660646293722 3 3.7533814898079485 3.2741373323218386 4 1.927151777719226 2.2414488899728195 5 1.158905503337189 1.6848876954523089 6 0.7940519565339156 1.3853295550961529 7 0.6183299086382714 1.2585521705718516 8 0.48418899654038466 1.126309719224012 9 0.43200121172518363 1.1305256063833262 >10 5.724030216950508 37.44366279512605 >50 0.4110215797683941 7.7836621752177635 >100 0.11476203467006255 5.730339289754514 >500 0.005350625093260755 1.091698025930417 >1k 0.0038745905847750303 2.189243763533467 >5k 5.535129406821471E-4 1.0595624360964044 >10k+ 3.690086271214314E-4 4.986113053711383 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 82266 4.366539650288295 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 10674 0.5665578030678197 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 7704 0.40891524403545837 No Hit CCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC 6634 0.35212146014164475 No Hit CTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT 5412 0.28725977423674726 Illumina Single End Adapter 1 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTG 3590 0.19055110670915054 No Hit GCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC 3498 0.18566790286033666 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3372 0.1789800367195698 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3064 0.1626319194865842 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 2278 0.12091237356084818 No Hit CGTTCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTC 2256 0.1197446509013492 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 2237 0.11873616314996371 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 2032 0.10785511109554148 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCC 2026 0.10753664127931449 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2987777659236235 0.0 2 0.0 0.0 0.0 0.97950699810882 0.0 3 0.0 0.0 0.0 1.6058309700219053 0.0 4 0.0 0.0 0.0 2.020584827354859 0.0 5 0.0 0.0 0.0 4.150457879978281 0.0 6 0.0 0.0 0.0 4.875295181710915 0.0 7 0.0 0.0 0.0 7.019552454367256 0.0 8 0.0 0.0 0.0 9.404944456210135 0.0 9 0.0 0.0 0.0 11.667619422200213 0.0 10 0.0 0.0 0.0 12.998133236093883 0.0 11 0.0 0.0 0.0 14.138308256489221 0.0 12 0.0 0.0 0.0 15.007624698183502 0.0 13 0.0 0.0 0.0 15.445308382284798 0.0 14 0.0 0.0 0.0 15.716856978921014 0.0 15 0.0 0.0 0.0 16.461280174351607 0.0 16 0.0 0.0 0.0 17.28563929365518 0.0 17 0.0 0.0 0.0 18.268596381439792 0.0 18 0.0 0.0 0.0 18.858243246184067 0.0 19 0.0 0.0 0.0 19.51471569403331 0.0 20 0.0 0.0 0.0 20.228247317289885 0.0 21 0.0 0.0 0.0 20.92251151666473 0.0 22 5.307830270449876E-5 0.0 0.0 21.594854377022614 0.0 23 5.307830270449876E-5 0.0 0.0 22.19580692024295 0.0 24 5.307830270449876E-5 0.0 0.0 22.69134595429215 0.0 25 1.0615660540899752E-4 0.0 0.0 23.181948706189832 0.0 26 1.0615660540899752E-4 0.0 0.0 23.676107704368714 0.0 27 1.0615660540899752E-4 0.0 0.0 24.18964028303474 0.0 28 1.0615660540899752E-4 0.0 0.0 24.705242915506243 0.0 29 1.0615660540899752E-4 0.0 0.0 25.23273508778355 0.0 30 1.0615660540899752E-4 0.0 0.0 25.730184940730112 0.0 31 1.0615660540899752E-4 0.0 0.0 26.211976694378848 0.0 32 1.0615660540899752E-4 0.0 0.0 26.73325870523973 0.0 33 1.0615660540899752E-4 0.0 0.0 27.242385784781284 0.0 34 1.0615660540899752E-4 0.0 0.0 27.79700096974059 0.0 35 1.0615660540899752E-4 0.0 0.0 28.276191886556806 0.0 36 1.0615660540899752E-4 0.0 0.0 28.77438483574123 0.0 37 1.0615660540899752E-4 0.0 0.0 29.368702591123505 0.0 38 1.0615660540899752E-4 0.0 0.0 30.020981853059087 0.0 39 1.0615660540899752E-4 0.0 0.0 30.72044772609897 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATAACGG 80 0.0 45.000004 1 GCGATCG 45 3.8562575E-10 45.0 8 CGTTTTT 20085 0.0 44.204628 1 ACGGGTA 180 0.0 43.75 4 CACGACG 370 0.0 41.959457 25 ACTACGG 140 0.0 41.785717 1 ACGTAGG 135 0.0 41.666668 1 TATACGG 135 0.0 41.666668 1 TTCACGG 120 0.0 41.250004 1 CCGTAGG 170 0.0 41.02941 1 CGGGTAC 335 0.0 40.970146 5 TCACGAC 385 0.0 40.909092 24 CTTACGG 165 0.0 40.90909 1 ACGGGAT 270 0.0 40.833336 4 CACTTAC 3080 0.0 40.76299 36 AGGGTAC 735 0.0 40.714287 5 TAACGGG 445 0.0 40.449436 2 TACGGGA 290 0.0 40.34483 3 CCCGCAC 3180 0.0 40.259434 32 ACCCGCA 3180 0.0 40.18868 31 >>END_MODULE