SRR1043276_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043276_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2769989
Sequences flagged as poor quality	0
Sequence length	52
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	113530	4.098572232597313	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	23754	0.8575485317811731	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	17594	0.6351649771894401	No Hit
CCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGCT	7204	0.2600732349478644	TruSeq Adapter, Index 22 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGCTT	6391	0.23072293788892304	Illumina Paired End PCR Primer 2 (95% over 22bp)
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	5873	0.2120225026164364	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	5643	0.20371922054564115	No Hit
CGCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGC	4432	0.16000063538158454	No Hit
GCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGCT	4215	0.15216666925392122	TruSeq Adapter, Index 22 (95% over 23bp)
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3709	0.13389944869817175	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCT	3539	0.12776224021106222	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTC	3078	0.111119574843077	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2923	0.10552388475188891	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA	2907	0.10494626512957271	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	31000	45.369354	1
ACTACGG	150	44.466663	1
TCACGAC	530	42.094337	24
CCCCAAC	2680	41.880596	12
ATAACGG	110	41.81818	1
TAGTAGG	550	41.4	1
GCACTTA	5855	41.364647	35
TCGGCGT	2685	41.28864	4
CGCACTT	5910	41.135365	34
CCGCACT	5925	40.992405	33
GTCCCCC	2735	40.954292	9
ACCCGCA	6025	40.92282	31
CGGTCTA	530	40.79245	30
CAACTTC	2725	40.682568	15
CTTACTG	5905	40.663845	38
CATGCGG	425	40.588234	1
CGACGGT	540	40.462963	27
CTTAGAG	2675	40.411213	21
CGTTCAG	2350	40.323406	38
ATCAACG	6790	40.275402	14