##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043276_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2769989 Sequences flagged as poor quality 0 Sequence length 52 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.358019472279494 33.0 31.0 34.0 31.0 34.0 2 32.7040345647582 34.0 31.0 34.0 31.0 34.0 3 32.84605101319897 34.0 31.0 34.0 31.0 34.0 4 36.24387028251737 37.0 37.0 37.0 35.0 37.0 5 36.20099538301416 37.0 37.0 37.0 35.0 37.0 6 36.31949477055685 37.0 37.0 37.0 35.0 37.0 7 36.26381115592878 37.0 37.0 37.0 35.0 37.0 8 36.25253241077853 37.0 37.0 37.0 35.0 37.0 9 37.85025788911075 39.0 38.0 39.0 35.0 39.0 10 37.66765427588341 39.0 37.0 39.0 35.0 39.0 11 37.397829377661786 39.0 37.0 39.0 35.0 39.0 12 37.40226766243476 39.0 37.0 39.0 35.0 39.0 13 37.37359426337072 39.0 37.0 39.0 35.0 39.0 14 38.76860738436145 41.0 38.0 41.0 35.0 41.0 15 38.83402461165008 41.0 38.0 41.0 35.0 41.0 16 38.72001296756052 41.0 38.0 41.0 34.0 41.0 17 38.69716594542433 41.0 38.0 41.0 34.0 41.0 18 38.47545134655769 40.0 38.0 41.0 34.0 41.0 19 38.220906653419924 40.0 37.0 41.0 34.0 41.0 20 37.93951383922463 40.0 35.0 41.0 34.0 41.0 21 37.86970020458565 40.0 35.0 41.0 34.0 41.0 22 37.80608226242054 40.0 35.0 41.0 34.0 41.0 23 37.8133584646004 40.0 35.0 41.0 34.0 41.0 24 37.70888801363471 40.0 35.0 41.0 34.0 41.0 25 37.60932083123796 39.0 35.0 41.0 34.0 41.0 26 37.500448557737954 39.0 35.0 41.0 34.0 41.0 27 37.51826162486566 39.0 35.0 41.0 34.0 41.0 28 37.47983331341749 39.0 35.0 41.0 34.0 41.0 29 37.386886012904746 39.0 35.0 41.0 33.0 41.0 30 37.29656976977165 39.0 35.0 41.0 33.0 41.0 31 37.147955100182706 39.0 35.0 41.0 33.0 41.0 32 36.85490411694776 39.0 35.0 41.0 32.0 41.0 33 36.505946774517874 39.0 35.0 41.0 31.0 41.0 34 36.145666643441544 39.0 35.0 41.0 30.0 41.0 35 35.95345938196866 39.0 35.0 41.0 30.0 41.0 36 35.83060438146144 38.0 35.0 41.0 30.0 41.0 37 35.74891055524047 38.0 35.0 41.0 29.0 41.0 38 35.58365863546751 38.0 35.0 41.0 28.0 41.0 39 35.60440817635016 38.0 35.0 41.0 29.0 41.0 40 35.552788837789606 38.0 35.0 41.0 29.0 41.0 41 35.52256453003965 38.0 35.0 41.0 29.0 41.0 42 35.44382739426041 38.0 35.0 41.0 28.0 41.0 43 35.3376778752551 37.0 35.0 40.0 28.0 41.0 44 35.13155720112968 37.0 35.0 40.0 27.0 41.0 45 35.01656179862086 37.0 35.0 40.0 26.0 41.0 46 34.95383916687034 37.0 35.0 40.0 26.0 41.0 47 34.865871669526484 36.0 35.0 40.0 26.0 41.0 48 34.74861416417177 36.0 35.0 40.0 26.0 41.0 49 34.672795451534284 36.0 35.0 40.0 26.0 41.0 50 34.5602960878184 35.0 35.0 40.0 26.0 41.0 51 34.41766880662703 35.0 34.0 40.0 26.0 41.0 52 34.0167246151519 35.0 34.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 1.0 11 3.0 12 8.0 13 13.0 14 28.0 15 53.0 16 109.0 17 252.0 18 569.0 19 1110.0 20 2119.0 21 3464.0 22 5492.0 23 8717.0 24 14722.0 25 26515.0 26 40282.0 27 49263.0 28 50277.0 29 47944.0 30 47953.0 31 52820.0 32 62672.0 33 82541.0 34 186070.0 35 254124.0 36 256612.0 37 280609.0 38 426106.0 39 867589.0 40 1951.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.293405497278147 16.395155359822727 22.967419726215518 30.344019416683604 2 35.67960017169744 19.117512741025326 23.377529658060013 21.825357429217227 3 26.955558307271254 20.829505099117725 33.14403053586133 19.07090605774969 4 23.191355633542226 23.59377600416464 31.254023030416366 21.96084533187677 5 22.07654976247198 32.023556772247105 28.01704266695644 17.88285079832447 6 79.04648718821628 2.0860010635421298 16.333494465140475 2.5340172831011243 7 78.40009472961806 2.0379503312107015 15.425151507821871 4.1368034313493665 8 69.85327378556377 3.5747795388357138 20.063617581152847 6.508329094447668 9 42.38309249603518 15.552913748032934 24.87814933561108 17.1858444203208 10 26.729853439851205 15.976742145907439 34.36768160451179 22.92572280972957 11 23.591537728128163 12.730700374622424 40.82442204644134 22.853339850808073 12 19.80246130941314 14.557097519159823 42.71991693829831 22.920524233128724 13 16.454650180921295 17.95100991375778 43.655191410507406 21.93914849481352 14 16.565697553311583 17.301548850916014 43.57742936885309 22.555324226919314 15 20.14968290487796 14.060091935383138 42.8233830531457 22.9668421065932 16 20.232174207189992 17.924222803772867 37.74830874779647 24.09529424124067 17 20.51094787741034 19.847479538727413 37.855023973019385 21.78654861084286 18 21.795754423573523 23.597566632936086 33.95883521559111 20.647843727899282 19 22.29041342763455 19.965566650264677 33.855730113007674 23.888289809093106 20 22.65644376205104 23.00973036355018 34.9361676165501 19.397658257848676 21 20.633619844699744 18.694261962773137 34.50786266660265 26.164255525924474 22 21.527377906554864 21.391709497763348 33.07338043580679 24.007532159875 23 21.40679981039636 19.322134492230838 36.26209345957692 23.00897223779589 24 24.431468861428694 18.16306851760061 33.07554650939047 24.32991611158023 25 20.195278753814545 18.80928047006685 34.85031890018336 26.145121875935246 26 19.746468307274867 18.465307984977557 35.35389490716389 26.434328800583685 27 22.53225554325306 19.61372409782133 35.319887551900024 22.534132807025586 28 23.706556235421875 21.154921553840104 31.52351868545326 23.61500352528476 29 23.24247497011721 18.724117677001605 33.980098837937625 24.05330851494356 30 27.628015851326488 19.045201984556616 30.048386473736898 23.27839569038 31 28.256971417576025 18.365813005033594 29.238888674287157 24.138326903103223 32 26.825196778759768 19.437730619146862 28.54903033910965 25.188042262983718 33 26.068839984563112 19.71744292125348 30.83986976121566 23.37384733296775 34 26.004074384410913 21.38012100409063 30.737414480707326 21.878390130791132 35 28.141808505376737 23.09518196642658 29.531525215443093 19.231484312753587 36 26.63429349358427 23.70698945013861 28.811775064810725 20.84694199146639 37 25.689307791474985 24.294392504807778 31.218571626096708 18.797728077620523 38 22.81070430243586 22.220088238617556 30.537341484027554 24.431865974919035 39 23.766989688406706 20.753367612651168 34.38999216242375 21.089650536518377 40 20.31257163837113 20.924848438026288 35.06071684761203 23.701863075990552 41 22.29081054112489 23.294893950842404 30.251022657490694 24.163272850542008 42 22.04932943777033 18.751229698024073 32.02684198384904 27.172598880356563 43 24.30471745555668 20.20744486710958 32.22168030270156 23.266157374632172 44 24.03782108882021 20.53571331871715 32.086264602494815 23.34020098996783 45 24.83053181799639 20.352716202122103 31.473662891802096 23.34308908807941 46 24.20164845419964 19.965602751491073 31.572544150897354 24.260204643411942 47 21.956043868766265 22.22095466805103 32.42648256003905 23.396518903143658 48 23.080199957472754 20.94427089782667 30.318640254528084 25.656888890172485 49 21.76441855906287 18.536644008333607 34.684181056314664 25.01475637628886 50 21.617017251693056 18.805670347427373 35.343714361320565 24.233598039559002 51 21.03539039324705 17.322704169583343 34.892232424027675 26.74967301314193 52 19.57227988992014 18.774081774331954 36.37848381347363 25.275154522274274 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 663.0 1 3985.0 2 7307.0 3 79294.0 4 151281.0 5 87403.0 6 23525.0 7 22164.0 8 20803.0 9 20283.0 10 19763.0 11 19102.5 12 18442.0 13 17546.5 14 15579.5 15 14508.0 16 13759.5 17 13011.0 18 12097.0 19 11183.0 20 10860.5 21 10538.0 22 9976.5 23 9415.0 24 9209.0 25 9003.0 26 10095.0 27 11187.0 28 12270.0 29 13353.0 30 14947.0 31 16541.0 32 18011.5 33 19482.0 34 23055.5 35 26629.0 36 29743.0 37 32857.0 38 35465.0 39 40810.5 40 43548.0 41 52419.5 42 61291.0 43 75697.5 44 90104.0 45 109436.0 46 128768.0 47 160477.0 48 192186.0 49 220773.0 50 249360.0 51 245580.5 52 241801.0 53 212415.0 54 183029.0 55 172201.5 56 161374.0 57 156816.0 58 152258.0 59 151325.5 60 150393.0 61 146903.0 62 143413.0 63 143831.0 64 123718.0 65 103187.0 66 88465.0 67 73743.0 68 62177.5 69 50612.0 70 44237.5 71 37863.0 72 35686.5 73 33510.0 74 27203.5 75 20897.0 76 16253.0 77 11609.0 78 9259.5 79 6910.0 80 4918.5 81 2927.0 82 2157.5 83 1388.0 84 1097.0 85 806.0 86 531.0 87 256.0 88 224.0 89 129.5 90 67.0 91 44.5 92 22.0 93 14.0 94 6.0 95 5.0 96 4.0 97 2.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2769989.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.85743820129905 #Duplication Level Percentage of deduplicated Percentage of total 1 75.99719101877483 21.170870522778387 2 9.151367673870059 5.09867318864402 3 3.262220627601975 2.7263132859727506 4 1.6079951584489418 1.791785030179179 5 0.9909454965721969 1.3802601465807787 6 0.7027156889445813 1.1745515326714175 7 0.6001924196987717 1.170387626845267 8 0.4769008835132869 1.0628189512493045 9 0.41606097456162605 1.0431353598140478 >10 6.216256166709297 39.366423386289306 >50 0.4412490683651995 8.017533381002027 >100 0.1259448471347263 6.04217365381878 >500 0.005610463804729747 1.0669006498614206 >1k 0.0044361806828095655 2.3460692040321347 >5k 5.219036097423019E-4 0.912715641286074 >10k+ 3.914277073067264E-4 5.629388438975133 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 113530 4.098572232597313 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 23754 0.8575485317811731 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 17594 0.6351649771894401 No Hit CCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGCT 7204 0.2600732349478644 TruSeq Adapter, Index 22 (95% over 23bp) CTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGCTT 6391 0.23072293788892304 Illumina Paired End PCR Primer 2 (95% over 22bp) GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 5873 0.2120225026164364 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 5643 0.20371922054564115 No Hit CGCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGC 4432 0.16000063538158454 No Hit GCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGCT 4215 0.15216666925392122 TruSeq Adapter, Index 22 (95% over 23bp) AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 3709 0.13389944869817175 No Hit CGTTCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCT 3539 0.12776224021106222 No Hit CGTTTCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTC 3078 0.111119574843077 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 2923 0.10552388475188891 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA 2907 0.10494626512957271 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.24068687637387728 0.0 2 0.0 0.0 0.0 0.7629272174005023 0.0 3 0.0 0.0 0.0 1.2693913224926163 0.0 4 0.0 0.0 0.0 1.6196815222009906 0.0 5 0.0 0.0 0.0 3.413154348266365 0.0 6 0.0 0.0 0.0 4.150521897379376 0.0 7 0.0 0.0 0.0 6.259519442134969 0.0 8 0.0 0.0 0.0 8.488409159747565 0.0 9 3.610122639476186E-5 0.0 0.0 10.732533594898753 0.0 10 7.220245278952371E-5 0.0 0.0 11.90376568282401 0.0 11 7.220245278952371E-5 0.0 0.0 12.825141182871123 0.0 12 7.220245278952371E-5 0.0 0.0 13.469114859300886 0.0 13 1.0830367918428556E-4 0.0 0.0 13.802329178924538 0.0 14 1.0830367918428556E-4 0.0 0.0 14.014496086446552 0.0 15 1.0830367918428556E-4 0.0 0.0 14.55532855906648 0.0 16 1.0830367918428556E-4 0.0 0.0 15.138255061662699 0.0 17 1.0830367918428556E-4 0.0 0.0 15.907102880191943 0.0 18 1.0830367918428556E-4 0.0 0.0 16.348259866735933 0.0 19 1.0830367918428556E-4 0.0 0.0 16.83905603957272 0.0 20 1.0830367918428556E-4 0.0 0.0 17.39219903039326 0.0 21 1.0830367918428556E-4 0.0 0.0 17.9446560979123 0.0 22 1.4440490557904743E-4 0.0 0.0 18.47252823025651 0.0 23 1.4440490557904743E-4 0.0 0.0 18.940327921879835 0.0 24 2.1660735836857113E-4 0.0 0.0 19.332820455243684 0.0 25 2.1660735836857113E-4 0.0 0.0 19.724338255494878 0.0 26 2.1660735836857113E-4 0.0 0.0 20.123690021873735 0.0 27 2.1660735836857113E-4 0.0 0.0 20.54412490446713 0.0 28 2.1660735836857113E-4 0.0 0.0 20.949830486691464 0.0 29 2.52708584763333E-4 0.0 0.0 21.36784658711641 0.0 30 2.52708584763333E-4 0.0 0.0 21.75965319717876 0.0 31 2.52708584763333E-4 0.0 0.0 22.143842448471815 0.0 32 2.52708584763333E-4 0.0 0.0 22.58828464661773 0.0 33 2.52708584763333E-4 0.0 0.0 23.006228544589888 0.0 34 2.52708584763333E-4 0.0 0.0 23.487782803469617 0.0 35 2.52708584763333E-4 0.0 0.0 23.889986566733658 0.0 36 2.52708584763333E-4 0.0 0.0 24.31774999828519 0.0 37 2.52708584763333E-4 0.0 0.0 24.814575075929906 0.0 38 2.52708584763333E-4 0.0 0.0 25.368837204768685 0.0 39 2.52708584763333E-4 0.0 0.0 25.94364093142608 0.0 40 2.52708584763333E-4 0.0 0.0 26.49454564621015 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 31000 0.0 45.369354 1 ACTACGG 150 0.0 44.466663 1 TCACGAC 530 0.0 42.094337 24 CCCCAAC 2680 0.0 41.880596 12 ATAACGG 110 0.0 41.81818 1 TAGTAGG 550 0.0 41.4 1 GCACTTA 5855 0.0 41.364647 35 TCGGCGT 2685 0.0 41.28864 4 CGCACTT 5910 0.0 41.135365 34 CCGCACT 5925 0.0 40.992405 33 GTCCCCC 2735 0.0 40.954292 9 ACCCGCA 6025 0.0 40.92282 31 CGGTCTA 530 0.0 40.79245 30 CAACTTC 2725 0.0 40.682568 15 CTTACTG 5905 0.0 40.663845 38 CATGCGG 425 0.0 40.588234 1 CGACGGT 540 0.0 40.462963 27 CTTAGAG 2675 0.0 40.411213 21 CGTTCAG 2350 0.0 40.323406 38 ATCAACG 6790 0.0 40.275402 14 >>END_MODULE