SRR1043275_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043275_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2717166
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	108888	4.007410662432844	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	22886	0.8422746346745101	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	14407	0.5302215617301262	No Hit
CCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGC	6812	0.25070238623624763	TruSeq Adapter, Index 22 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGCT	6070	0.22339452208661523	Illumina Paired End PCR Primer 2 (95% over 21bp)
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5573	0.2051034055335596	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5223	0.19222233753844997	No Hit
CGCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTG	4287	0.15777468141438541	No Hit
GCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGC	4127	0.1518861931880496	TruSeq Adapter, Index 22 (95% over 22bp)
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3674	0.1352144108972363	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTC	3257	0.11986753845734859	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTT	3046	0.11210209460886822	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2959	0.10890022913579811	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	2769	0.10190764936702432	No Hit
GGGCCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTC	2740	0.10084036087600096	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	30300	44.279705	1
CGCACTT	5765	41.29228	34
GCACTTA	5775	41.22078	35
CTTACTG	5750	40.930435	38
CCGGTAT	205	40.60976	42
CTTCTTA	2130	40.563377	18
ACCCGCA	5940	40.530304	31
ATAACGG	100	40.500004	1
CCGCACT	5875	40.48085	33
CACGACG	445	40.449436	25
CGGTCTA	445	40.449436	30
CCAGTAG	2145	40.384613	25
CACTTAC	5890	40.377758	36
TAGCATA	2075	40.12048	29
CCCGCAC	6020	40.10382	32
GTTGATC	2205	40.0	15
ACTTACT	5905	39.932262	37
GCGTAGG	470	39.734043	1
ACCGGTA	210	39.64286	41
CATATGC	2090	39.617226	32