SRR1043273_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043273_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2174697
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	81014	3.7253005821040817	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	13558	0.62344317392262	No Hit
CCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC	8728	0.40134326759084143	RNA PCR Primer, Index 10 (95% over 23bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	8494	0.39058314790520243	No Hit
CTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGCT	7516	0.34561136562932676	TruSeq Adapter, Index 10 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC	5292	0.2433442451982966	RNA PCR Primer, Index 35 (95% over 24bp)
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3590	0.16508046868138412	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTG	3554	0.16342506565282428	TruSeq Adapter, Index 10 (95% over 22bp)
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3445	0.15841287314968477	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCC	2804	0.1289375025578276	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2560	0.11771754869758869	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2342	0.10769316369130964	No Hit
TCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC	2203	0.10130146866437026	RNA PCR Primer, Index 35 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTTAT	25	3.8919574E-5	45.000004	22
GACCGTA	20	7.034678E-4	45.0	15
CGATTCG	20	7.034678E-4	45.0	9
CACCGTA	20	7.034678E-4	45.0	37
AATACGG	45	3.8562575E-10	45.0	1
CGTTTTT	20500	0.0	44.341465	1
ACGTAGG	155	0.0	43.548386	1
GCGATAT	100	0.0	42.750004	8
TCTACGG	150	0.0	42.000004	1
ATAACGG	75	0.0	42.000004	1
CTTGCGG	610	0.0	41.68033	1
ATAGCGG	365	0.0	41.30137	1
CATACGA	235	0.0	41.17021	17
CGTTCAG	1180	0.0	40.99576	38
CGCACTT	3805	0.0	40.978973	34
CCCGCAC	3895	0.0	40.898586	32
CACTTAC	3815	0.0	40.871555	36
ACCCGCA	3900	0.0	40.788464	31
CCGCACT	3830	0.0	40.711487	33
AGGGCGA	1140	0.0	40.657894	5