SRR1043272_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043272_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2193587
Sequences flagged as poor quality	0
Sequence length	52
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	110038	5.01634993278133	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	14087	0.6421901661525165	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	11046	0.5035587829431885	No Hit
CCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGCT	8361	0.38115652581821463	RNA PCR Primer, Index 16 (96% over 26bp)
CTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGCTT	7192	0.3278648168502093	RNA PCR Primer, Index 16 (96% over 27bp)
CGCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGC	5268	0.24015459610218332	RNA PCR Primer, Index 16 (96% over 25bp)
GCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGCT	4803	0.21895643984031635	Illumina PCR Primer Index 7 (95% over 23bp)
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	4270	0.19465833814660644	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCT	4148	0.1890966713424177	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3843	0.1751925043319458	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTC	3449	0.1572310558003854	RNA PCR Primer, Index 16 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCG	2876	0.1311094567938267	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTT	2599	0.11848173790234898	RNA PCR Primer, Index 16 (95% over 21bp)
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2532	0.11542737990332728	No Hit
CGTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTG	2213	0.10088498883335834	RNA PCR Primer, Index 16 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGACG	20	6.312714E-4	46.0	31
AATGCGT	25	3.4181794E-5	46.0	26
CGTTTTT	26375	0.0	45.494217	1
CACTTAC	3610	0.0	42.750694	36
TACGGGA	325	0.0	42.461536	3
ACCCGCA	3775	0.0	41.856953	31
TTACGGG	660	0.0	41.818184	2
ATTGCGG	495	0.0	41.81818	1
ACTTACT	3620	0.0	41.80663	37
CGCACTT	3710	0.0	41.784367	34
ATAGCGG	325	0.0	41.753845	1
GCACTTA	3700	0.0	41.71081	35
CCGCACT	3740	0.0	41.572193	33
CACGACG	415	0.0	41.566265	25
CCCGCAC	3825	0.0	41.490192	32
GTCGGCG	1555	0.0	41.41479	3
CTCGAGG	285	0.0	41.157898	1
CTTACTG	3695	0.0	41.14479	38
TCAACGC	4415	0.0	40.998867	15
ATCAACG	4410	0.0	40.9932	14