##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043271_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2143049 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.319331009230304 33.0 31.0 34.0 31.0 34.0 2 32.61409981759633 34.0 31.0 34.0 31.0 34.0 3 32.711993519513555 34.0 31.0 34.0 31.0 34.0 4 36.19859041953777 37.0 37.0 37.0 35.0 37.0 5 36.18921825865858 37.0 37.0 37.0 35.0 37.0 6 36.333461344094324 37.0 37.0 37.0 35.0 37.0 7 36.28309665341296 37.0 37.0 37.0 35.0 37.0 8 36.18828360900754 37.0 37.0 37.0 35.0 37.0 9 37.797612653747066 39.0 38.0 39.0 35.0 39.0 10 37.59823597127271 39.0 37.0 39.0 35.0 39.0 11 37.27760447847903 39.0 37.0 39.0 35.0 39.0 12 37.291830471445124 39.0 37.0 39.0 35.0 39.0 13 37.291550496512215 39.0 37.0 39.0 35.0 39.0 14 38.582055753274894 40.0 38.0 41.0 35.0 41.0 15 38.65339896567927 40.0 38.0 41.0 35.0 41.0 16 38.581436542048266 40.0 38.0 41.0 34.0 41.0 17 38.52627121451726 40.0 37.0 41.0 34.0 41.0 18 38.341037465778896 40.0 37.0 41.0 34.0 41.0 19 38.12911370668613 40.0 37.0 41.0 34.0 41.0 20 37.84472543558267 40.0 35.0 41.0 34.0 41.0 21 37.798530971527015 40.0 35.0 41.0 34.0 41.0 22 37.77692670582894 40.0 35.0 41.0 34.0 41.0 23 37.76046604627332 40.0 35.0 41.0 34.0 41.0 24 37.6695115230683 39.0 35.0 41.0 34.0 41.0 25 37.63239337971274 39.0 35.0 41.0 34.0 41.0 26 37.59808945105782 39.0 35.0 41.0 34.0 41.0 27 37.580863526685576 39.0 35.0 41.0 34.0 41.0 28 37.47023189857068 39.0 35.0 41.0 34.0 41.0 29 37.40302484917517 39.0 35.0 41.0 34.0 41.0 30 37.29054352000351 39.0 35.0 41.0 33.0 41.0 31 37.12136073416893 39.0 35.0 41.0 33.0 41.0 32 36.90065322818097 39.0 35.0 41.0 33.0 41.0 33 36.44085319561055 39.0 35.0 41.0 31.0 41.0 34 36.1846714657481 39.0 35.0 41.0 31.0 41.0 35 36.0051776697593 38.0 35.0 41.0 30.0 41.0 36 35.91542470564136 38.0 35.0 41.0 30.0 41.0 37 35.79805641401573 38.0 35.0 41.0 30.0 41.0 38 35.74118370601885 38.0 35.0 41.0 30.0 41.0 39 35.69837880515098 38.0 35.0 41.0 29.0 41.0 40 35.62323493303233 38.0 35.0 41.0 29.0 41.0 41 35.57205458204642 38.0 35.0 40.0 29.0 41.0 42 35.475062399413176 38.0 35.0 40.0 29.0 41.0 43 35.345169895788665 37.0 35.0 40.0 28.0 41.0 44 35.2141738243036 37.0 35.0 40.0 28.0 41.0 45 35.1394858447007 37.0 35.0 40.0 27.0 41.0 46 35.061665878848316 37.0 35.0 40.0 27.0 41.0 47 34.93954081311253 37.0 35.0 40.0 26.0 41.0 48 34.880866466422376 36.0 35.0 40.0 26.0 41.0 49 34.80929554107256 36.0 35.0 40.0 27.0 41.0 50 34.73149983971435 36.0 35.0 40.0 26.0 41.0 51 34.32886648882037 35.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 1.0 13 9.0 14 11.0 15 35.0 16 82.0 17 150.0 18 364.0 19 740.0 20 1341.0 21 2252.0 22 3507.0 23 5661.0 24 9718.0 25 17365.0 26 27966.0 27 35192.0 28 37492.0 29 37073.0 30 39273.0 31 44236.0 32 50790.0 33 65387.0 34 148061.0 35 222007.0 36 195301.0 37 194459.0 38 309224.0 39 695179.0 40 170.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.850903549102235 17.406648191431927 23.687419186402177 30.05502907306366 2 35.467084513699874 19.66478601282565 24.284279080879625 20.583850392594847 3 25.736369070422562 20.62351350809058 34.31046140335569 19.32965601813118 4 22.782913503144353 23.231759983089514 32.457353984906554 21.527972528859582 5 21.06018107845411 31.31127659703535 29.369230474898146 18.2593118496124 6 77.19179542791602 2.0412039108765128 17.759183294455703 3.0078173667517634 7 77.12427480659565 1.9782562134603547 16.136728558236417 4.760740421707577 8 67.72346315926514 3.410887945165976 21.658114210174382 7.207534685394501 9 41.272458072587234 15.134651610859107 26.004538393662486 17.58835192289117 10 29.187713393394176 15.472488029905056 35.36666683776246 19.973131738938307 11 25.89483488245019 12.887059511938364 39.49611044824453 21.721995157366912 12 21.519246643450522 14.186609825533619 41.73147697509483 22.562666555921027 13 17.060459186887467 17.5967511708785 43.35883127264006 21.983958369593974 14 17.42027363816693 17.539356309631746 43.358224660285416 21.68214539191591 15 21.28360107491709 14.726868121074228 42.69818375594772 21.291347048060963 16 19.982510899190824 18.690846546205897 38.91684231205166 22.40980024255162 17 20.76312767463553 19.9695853897881 38.78712059313622 20.48016634244014 18 21.16605826558329 25.851112130427257 34.853146148314856 18.129683455674602 19 22.678249540724455 21.137827459848094 33.612110595698 22.571812403729453 20 21.34248913580604 25.684060420457023 34.30070894319262 18.67274150054432 21 19.256629223130222 20.20602422063145 35.9912442505981 24.546102305640236 22 20.848053404285203 21.69399766407581 33.71308822150124 23.744860710137754 23 21.64943498725414 19.616070374499138 36.71955237607726 22.01494226216946 24 23.708323981392866 18.04657756308885 33.561108495419376 24.683989960098906 25 17.880739077827897 19.464743923260738 36.70909997858192 25.945417020329447 26 17.43123932303928 19.470390084407775 36.346019153085166 26.752351439467787 27 21.591386851163925 21.3991373972317 35.47142412515999 21.53805162644438 28 22.67894947805673 21.9426620669896 32.18834473686789 23.190043718085775 29 21.49484216179845 20.874371047978837 34.672375666631986 22.958411123590736 30 27.03269967228934 19.269321420088854 30.490016793829728 23.207962113792078 31 24.96653132989493 21.098584306751736 31.28281247885606 22.652071884497275 32 25.122617354992816 20.866111787457964 28.5426044854784 25.46866637207082 33 20.701393201928653 20.897142342522265 33.951253564430864 24.450210891118214 34 20.574284582387055 23.006333499607333 32.23766698754905 24.18171493045656 35 20.899615454429647 23.73445497513123 29.721998890366013 25.64393068007311 36 21.62559045546789 23.39493870648781 27.1274245245909 27.852046313453403 37 19.839677020917392 26.13808643666104 28.75020589823191 25.27203064418966 38 19.323403244629496 22.213351164625728 27.66567633311231 30.797569257632468 39 20.767980573472656 19.166243982288787 31.67827707159286 28.3874983726457 40 17.501932993599308 20.046625158827446 34.09833372918678 28.353108118386466 41 19.33058926790755 22.987388529147022 29.609542292313428 28.072479910632005 42 19.1932615633147 17.563947441239094 32.533040541770156 30.709750453676047 43 21.544911012300698 19.173709980499744 33.52349852943167 25.75788047776789 44 21.59679969986687 20.564018834846987 32.63859109147761 25.20059037380853 45 21.815040160071 21.281967887808445 32.16310033041708 24.73989162170347 46 21.920824022222543 20.13458395025032 31.507958987405328 26.43663304012181 47 19.316777171217268 20.21642995563797 34.194038493753524 26.272754379391234 48 21.064100727514866 18.578343285664488 31.372591107342856 28.984964879477793 49 20.24228097444342 17.177628696310723 35.45285245461023 27.127237874635625 50 19.427460594694754 16.93680359151844 36.93014018811516 26.705595625671645 51 18.208776374221962 16.183251059588464 35.157852200299665 30.45012036588991 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 614.0 1 3294.5 2 5975.0 3 71841.5 4 137708.0 5 78555.0 6 19402.0 7 17159.0 8 14916.0 9 14506.5 10 14097.0 11 13737.5 12 13378.0 13 12786.0 14 12194.0 15 11311.0 16 10428.0 17 9508.0 18 8588.0 19 7950.5 20 7313.0 21 6874.5 22 6436.0 23 6353.0 24 6270.0 25 6638.0 26 7562.0 27 8118.0 28 8412.5 29 8707.0 30 10175.0 31 11643.0 32 13158.5 33 14674.0 34 17629.0 35 20584.0 36 23522.0 37 26460.0 38 28918.0 39 31376.0 40 35069.5 41 38763.0 42 45423.5 43 52084.0 44 59368.0 45 66652.0 46 79092.5 47 91533.0 48 124245.5 49 156958.0 50 191728.0 51 226498.0 52 232579.0 53 238660.0 54 213171.5 55 187683.0 56 166074.5 57 144466.0 58 129739.0 59 115012.0 60 109599.0 61 104186.0 62 100378.5 63 96571.0 64 91333.0 65 86095.0 66 69308.0 67 52521.0 68 42278.0 69 32035.0 70 27426.5 71 22818.0 72 20826.0 73 18834.0 74 16152.5 75 9927.0 76 6383.0 77 4726.0 78 3069.0 79 2365.0 80 1661.0 81 1190.0 82 719.0 83 493.0 84 267.0 85 214.0 86 161.0 87 93.0 88 25.0 89 24.5 90 24.0 91 16.5 92 9.0 93 5.0 94 1.0 95 1.5 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2143049.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.98235110373321 #Duplication Level Percentage of deduplicated Percentage of total 1 73.9057558666944 22.158683209820218 2 10.389333385551987 6.22993282598714 3 3.790545975554533 3.4094844094175683 4 1.9914875104195824 2.388379110243979 5 1.1920427059296916 1.787012146991411 6 0.8586257342492974 1.54461709385779 7 0.7120537769517137 1.494433244171393 8 0.5855457140192585 1.4044829748009253 9 0.5312924618655628 1.4336457417378081 >10 5.623944448814864 34.50343246494806 >50 0.2680078886244845 5.418376723053037 >100 0.13914285533682372 7.253133219309044 >500 0.0064242143012600075 1.286608186830914 >1k 0.004857332764367323 2.8287340254007316 >5k 6.26752614757074E-4 1.3781698531738307 >10k+ 3.13376307378537E-4 5.480874770256044 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 103130 4.81230247185202 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 13537 0.6316701111360497 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 9058 0.42266882371798314 No Hit CCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGC 8182 0.3817924835129761 RNA PCR Primer, Index 16 (96% over 25bp) CTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGCT 6956 0.3245842722214938 RNA PCR Primer, Index 16 (96% over 26bp) CGCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTG 5140 0.23984519252709574 RNA PCR Primer, Index 16 (95% over 24bp) GCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGC 4777 0.22290670908597984 Illumina PCR Primer Index 7 (95% over 22bp) GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 4199 0.19593579054888619 No Hit CGTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTC 3909 0.18240366879152087 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3796 0.17713080755503025 No Hit CGTTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTT 3106 0.14493369027026448 RNA PCR Primer, Index 16 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCC 2607 0.1216491083498324 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCT 2441 0.11390313520596124 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 2390 0.11152334827621768 No Hit CGTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCT 2221 0.10363738766589099 RNA PCR Primer, Index 16 (95% over 23bp) GGGCCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTC 2210 0.10312410028888747 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.33587659451557106 0.0 2 0.0 0.0 0.0 1.107907472017672 0.0 3 0.0 0.0 0.0 1.8558605052894264 0.0 4 0.0 0.0 0.0 2.326125067602281 0.0 5 0.0 0.0 0.0 4.7634468460590496 0.0 6 0.0 0.0 0.0 5.688250711952923 0.0 7 0.0 0.0 0.0 8.278392141290283 0.0 8 0.0 0.0 0.0 11.3019814292627 0.0 9 0.0 0.0 0.0 14.067480491579987 0.0 10 0.0 0.0 0.0 15.633426953840067 0.0 11 0.0 0.0 0.0 16.869656270108617 0.0 12 0.0 0.0 0.0 17.739678374129568 0.0 13 0.0 0.0 0.0 18.210502886308245 0.0 14 0.0 0.0 0.0 18.516142188069427 0.0 15 0.0 0.0 0.0 19.268108195379575 0.0 16 0.0 0.0 0.0 20.092774360268944 0.0 17 0.0 0.0 0.0 21.125321912844736 0.0 18 0.0 0.0 0.0 21.73450070437027 4.666248881850112E-5 19 0.0 0.0 0.0 22.38539576089954 4.666248881850112E-5 20 0.0 0.0 0.0 23.15532682640481 4.666248881850112E-5 21 0.0 0.0 0.0 23.90990593308879 4.666248881850112E-5 22 0.0 0.0 0.0 24.621648875037387 4.666248881850112E-5 23 0.0 0.0 0.0 25.236613815176415 4.666248881850112E-5 24 4.666248881850112E-5 0.0 0.0 25.76254672664974 4.666248881850112E-5 25 4.666248881850112E-5 0.0 0.0 26.27774726569481 4.666248881850112E-5 26 4.666248881850112E-5 0.0 0.0 26.7594441377682 4.666248881850112E-5 27 4.666248881850112E-5 0.0 0.0 27.290043298123376 4.666248881850112E-5 28 9.332497763700224E-5 0.0 0.0 27.792504977720995 4.666248881850112E-5 29 9.332497763700224E-5 0.0 0.0 28.331036761175316 4.666248881850112E-5 30 9.332497763700224E-5 0.0 0.0 28.82873886691345 4.666248881850112E-5 31 9.332497763700224E-5 0.0 0.0 29.329474034424784 4.666248881850112E-5 32 9.332497763700224E-5 0.0 0.0 29.8911970748219 4.666248881850112E-5 33 9.332497763700224E-5 0.0 0.0 30.428982258455125 4.666248881850112E-5 34 9.332497763700224E-5 0.0 0.0 31.027895302440587 4.666248881850112E-5 35 9.332497763700224E-5 0.0 0.0 31.53842959260381 4.666248881850112E-5 36 9.332497763700224E-5 0.0 0.0 32.07556150139357 4.666248881850112E-5 37 9.332497763700224E-5 0.0 0.0 32.78142496975104 4.666248881850112E-5 38 9.332497763700224E-5 0.0 0.0 33.490601474814625 4.666248881850112E-5 39 9.332497763700224E-5 0.0 0.0 34.263518939604275 4.666248881850112E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 24785 0.0 44.228363 1 TACGCGG 160 0.0 43.59375 1 CGGTCTA 350 0.0 42.42857 30 ACCCGCA 4080 0.0 41.856617 31 CACGACG 355 0.0 41.830982 25 TACGGGA 270 0.0 41.666664 3 CACTTAC 4010 0.0 41.5212 36 ATTGCGG 425 0.0 41.294117 1 CGCACTT 4055 0.0 41.282368 34 TACGGGT 120 0.0 41.250004 3 ACTTACT 3995 0.0 41.057575 37 CGTTCAG 1125 0.0 41.0 38 CTTACTG 3985 0.0 40.99122 38 CCCGCAC 4190 0.0 40.918858 32 CCGCACT 4115 0.0 40.84447 33 AATGCGG 295 0.0 40.42373 1 TATGACC 4465 0.0 40.263157 27 TCGGCGT 1300 0.0 40.153847 4 CTTATGA 4560 0.0 40.11513 25 GCACTTA 4145 0.0 40.060314 35 >>END_MODULE