FastQCFastQC Report
Thu 26 May 2016
SRR1043269_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1043269_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences997340
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT650176.51904064812401No Hit
CCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC84890.8511640964966812No Hit
CTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGCT83830.8405358252952855Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC62970.6313794693885736No Hit
CGCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTG38040.3814145627368801No Hit
TCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC32600.3268694727976417No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCC31520.31604066817735177No Hit
ACCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTG20150.20203741953596566No Hit
GCCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTG19870.19922995167144605No Hit
CGTTCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTC18720.18769928008502615No Hit
AGCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTG17160.17205767341127398No Hit
ACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC16660.16704433793891751No Hit
TCCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTG16090.16132913550043115No Hit
TGCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTG14070.141075260192111No Hit
TGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGCTT13320.13355525698357631Illumina Single End Adapter 1 (95% over 22bp)
GGCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTG13080.13114885595684522No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTC12330.12362885274831051No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGC11980.12011951791766097No Hit
CGTCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCT11830.11861551727595403No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCT11620.11650991637756432No Hit
GTAATGGGTTTACCTGGCTTCCTTCTTGGTACATAGGCTACTCTTCCACAC10840.10868911304068823No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTT10710.10738564581787556No Hit
ATCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTG10350.10377604427777888No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCG10290.10317444402109613No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCATAA207.032836E-445.00000444
CGGGTCC406.8139343E-945.0000045
AGTCCAC207.032836E-445.00000433
CAACCGG351.2117198E-745.0000041
ATTAACG207.032836E-445.0000049
TGCGGAT207.032836E-445.00000416
TGTGCGT406.8139343E-945.00000419
TAGCATA207.032836E-445.00000429
CACTCGC351.2117198E-745.00000421
TGTTCGG207.032836E-445.0000041
GGACGTA207.032836E-445.00000419
CATACCG406.8139343E-945.00000413
TCATCGG453.8380676E-1045.0000041
CCGACAT207.032836E-445.0000049
GAGCATT207.032836E-445.0000048
GTCCACC207.032836E-445.00000434
CGATCTT207.032836E-445.0000049
TCGACCC207.032836E-445.00000423
TAGCTAA207.032836E-445.00000438
TAGTCGG351.2117198E-745.0000041