SRR1043268_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043268_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2754497
Sequences flagged as poor quality	0
Sequence length	52
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	121032	4.39397828351238	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	16801	0.6099480231780975	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	13195	0.47903482922653395	No Hit
CCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGCT	9152	0.3322566697295368	Illumina Single End Adapter 2 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGCTT	7374	0.2677076794783222	Illumina Single End Adapter 2 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGC	5345	0.1940463177124535	No Hit
GCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGCT	4639	0.16841550381067757	Illumina Single End Adapter 2 (95% over 21bp)
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	4116	0.14942837113273313	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3810	0.1383192648240314	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCT	3721	0.1350881848845724	No Hit
GGGCCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCT	3582	0.1300418914959791	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCG	2990	0.10854976425822935	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTC	2955	0.10727911484383537	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	29915	45.238842	1
TATGCGG	525	42.495235	1
AGGGCGA	1155	41.619045	5
TAGTAGG	710	41.46479	1
CACTTAC	4435	41.332584	36
GCACTTA	4450	41.19326	35
TCACGAC	425	41.12941	24
ACCCGCA	4530	41.024284	31
ACTTACT	4460	40.997757	37
CTTACTG	4450	40.934834	38
CGCACTT	4490	40.82628	34
CCGCACT	4495	40.78087	33
ACTACGG	175	40.74286	1
CCCGCAC	4575	40.721313	32
ATCAACG	5225	40.49761	14
CTTATGA	4965	40.48741	25
GTCCCCC	1945	40.442158	9
TACGGGA	455	40.43956	3
ATTACGG	165	40.42424	1
TTATGAC	4980	40.411648	26