FastQCFastQC Report
Thu 26 May 2016
SRR1043268_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1043268_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences2754497
Sequences flagged as poor quality0
Sequence length52
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1210324.39397828351238No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC168010.6099480231780975No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA131950.47903482922653395No Hit
CCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGCT91520.3322566697295368Illumina Single End Adapter 2 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGCTT73740.2677076794783222Illumina Single End Adapter 2 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGC53450.1940463177124535No Hit
GCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGCT46390.16841550381067757Illumina Single End Adapter 2 (95% over 21bp)
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC41160.14942837113273313No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC38100.1383192648240314No Hit
CGTTCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCT37210.1350881848845724No Hit
GGGCCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCT35820.1300418914959791No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCG29900.10854976425822935No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTC29550.10727911484383537No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTTTT299150.045.2388421
TATGCGG5250.042.4952351
AGGGCGA11550.041.6190455
TAGTAGG7100.041.464791
CACTTAC44350.041.33258436
GCACTTA44500.041.1932635
TCACGAC4250.041.1294124
ACCCGCA45300.041.02428431
ACTTACT44600.040.99775737
CTTACTG44500.040.93483438
CGCACTT44900.040.8262834
CCGCACT44950.040.7808733
ACTACGG1750.040.742861
CCCGCAC45750.040.72131332
ATCAACG52250.040.4976114
CTTATGA49650.040.4874125
GTCCCCC19450.040.4421589
TACGGGA4550.040.439563
ATTACGG1650.040.424241
TTATGAC49800.040.41164826