SRR1043267_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043267_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2695336
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	115068	4.2691523431587015	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	16266	0.603486912206864	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	11155	0.4138630582606399	No Hit
CCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGC	8904	0.3303484240925807	No Hit
CTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGCT	7233	0.26835244288652693	Illumina Single End Adapter 2 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTG	5208	0.19322266314849057	No Hit
GCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGC	4636	0.1720008191928576	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4058	0.15055636848244522	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3703	0.137385468824666	No Hit
GGGCCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTC	3550	0.13170899657779217	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTC	3512	0.13029915379752283	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTT	3007	0.11156308527025943	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCC	2829	0.10495908487847154	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2757	0.10228780382111914	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	28195	44.24189	1
AATACGG	165	43.636364	1
ACTACGG	150	42.0	1
TAGTAGG	630	41.785713	1
AGACACG	445	40.95506	23
TGCAACG	105	40.714283	11
CACTTAC	4590	40.539215	36
ACCCGCA	4675	40.331554	31
CGCACTT	4630	40.23758	34
ACTTACT	4600	40.157608	37
GCACTTA	4635	40.14563	35
CCGCACT	4645	40.10764	33
CATGCGG	365	40.068493	1
CTTACTG	4635	39.757282	38
GCGATAT	85	39.705883	8
AGGGCGA	1095	39.65753	5
CCCGCAC	4765	39.616997	32
CGGGTAC	415	39.578312	5
TACGGGA	490	39.489796	3
GTTTTTT	32445	39.39667	2