SRR1043263_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043263_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2099488
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	82301	3.920050983858922	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	14894	0.7094110564099438	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	8774	0.4179114145925102	No Hit
CCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC	5240	0.2495846606410706	No Hit
CTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGCT	4222	0.20109664832568702	No Hit
CGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTG	3670	0.17480452376960479	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3461	0.1648497157402186	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2986	0.1422251520370681	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTC	2938	0.1399388803365392	No Hit
GCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC	2778	0.13231797466810954	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTT	2703	0.12874567513603316	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2507	0.11941006569220686	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2386	0.11364675578045694	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	22375	0.0	44.29609	1
GGTACGA	60	3.6379788E-12	41.250004	7
CACGACG	335	0.0	40.97015	25
CTAGCGG	555	0.0	40.945946	1
ATTGCGG	495	0.0	40.90909	1
CGTAGGG	815	0.0	40.58282	2
TAGCGGG	1550	0.0	40.5	2
GCGATAG	150	0.0	40.5	8
CGCACTT	3710	0.0	40.45148	34
GCGCGAC	1700	0.0	40.36765	8
TACGGGA	430	0.0	40.2907	3
ACCCGCA	3755	0.0	40.206394	31
CCCGCAC	3765	0.0	40.159363	32
GTCGGCG	1300	0.0	40.153843	3
TCGGCGT	1285	0.0	40.097275	4
TACGCGG	275	0.0	40.090908	1
CCGCACT	3730	0.0	40.05362	33
GCGTAGG	315	0.0	40.0	1
GCACTTA	3755	0.0	39.90679	35
TCACGAC	350	0.0	39.857143	24