##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043261_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2142083 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.289369272805956 33.0 31.0 34.0 31.0 34.0 2 32.59110034485125 34.0 31.0 34.0 31.0 34.0 3 32.65414038578337 34.0 31.0 34.0 31.0 34.0 4 36.18248732658819 37.0 37.0 37.0 35.0 37.0 5 36.158933617418185 37.0 37.0 37.0 35.0 37.0 6 36.33814889525756 37.0 37.0 37.0 35.0 37.0 7 36.2773239879127 37.0 37.0 37.0 35.0 37.0 8 36.180913624728824 37.0 37.0 37.0 35.0 37.0 9 37.80133122759482 39.0 38.0 39.0 35.0 39.0 10 37.63383398309029 39.0 37.0 39.0 35.0 39.0 11 37.38926456164397 39.0 37.0 39.0 35.0 39.0 12 37.394481913165826 39.0 37.0 39.0 35.0 39.0 13 37.387324394059426 39.0 37.0 39.0 35.0 39.0 14 38.64283876955282 40.0 38.0 41.0 35.0 41.0 15 38.75105446427613 40.0 38.0 41.0 35.0 41.0 16 38.74148714125457 40.0 38.0 41.0 35.0 41.0 17 38.63220659516928 40.0 38.0 41.0 34.0 41.0 18 38.41016898038031 40.0 38.0 41.0 34.0 41.0 19 38.161888218150274 40.0 37.0 41.0 34.0 41.0 20 37.75147088138041 40.0 35.0 41.0 34.0 41.0 21 37.74067017944683 39.0 35.0 41.0 34.0 41.0 22 37.73178303548462 39.0 35.0 41.0 34.0 41.0 23 37.68641271136553 39.0 35.0 41.0 34.0 41.0 24 37.62754757868859 39.0 35.0 41.0 34.0 41.0 25 37.58135562440858 39.0 35.0 41.0 34.0 41.0 26 37.52905559681861 39.0 35.0 41.0 34.0 41.0 27 37.475644034334806 39.0 35.0 41.0 34.0 41.0 28 37.39861947459552 39.0 35.0 41.0 34.0 41.0 29 37.276067267234744 39.0 35.0 41.0 33.0 41.0 30 37.19071203123315 39.0 35.0 41.0 33.0 41.0 31 36.94705573967022 39.0 35.0 41.0 33.0 41.0 32 36.60957115107118 39.0 35.0 41.0 32.0 41.0 33 36.125176755522546 38.0 35.0 41.0 30.0 41.0 34 35.91054221521762 38.0 35.0 41.0 30.0 41.0 35 35.72811417671491 38.0 35.0 41.0 29.0 41.0 36 35.711946735957476 38.0 35.0 41.0 29.0 41.0 37 35.60534068941306 38.0 35.0 41.0 29.0 41.0 38 35.49779490337209 38.0 35.0 40.0 28.0 41.0 39 35.40420235817193 38.0 35.0 40.0 27.0 41.0 40 35.34888424024653 38.0 35.0 40.0 27.0 41.0 41 35.2540298391799 38.0 35.0 40.0 27.0 41.0 42 35.18082959437146 38.0 35.0 40.0 26.0 41.0 43 35.07252239992568 37.0 35.0 40.0 25.0 41.0 44 34.963795520528386 37.0 35.0 40.0 25.0 41.0 45 34.88153727003109 37.0 35.0 40.0 24.0 41.0 46 34.787258943747744 37.0 35.0 40.0 24.0 41.0 47 34.64959387661449 37.0 35.0 40.0 23.0 41.0 48 34.60325626971504 36.0 35.0 40.0 23.0 41.0 49 34.53072173207107 36.0 34.0 40.0 24.0 41.0 50 34.46468460839286 36.0 34.0 40.0 24.0 41.0 51 34.064139438107674 35.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 1.0 13 6.0 14 10.0 15 44.0 16 82.0 17 157.0 18 387.0 19 715.0 20 1356.0 21 2274.0 22 3665.0 23 6111.0 24 10644.0 25 20001.0 26 31821.0 27 39864.0 28 41481.0 29 40215.0 30 41514.0 31 45238.0 32 52135.0 33 66990.0 34 139173.0 35 193545.0 36 220421.0 37 199702.0 38 315318.0 39 669133.0 40 78.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.845186204269396 16.529471547087578 22.629842074280035 32.99550017436299 2 38.30631212702776 18.206157277752546 22.37700406566879 21.11052652955091 3 23.962563542122318 20.022426768710645 36.40689926580809 19.608110423358944 4 22.43484496165648 22.357770450538098 34.68399683859122 20.5233877492142 5 21.05810092326021 29.029360673699383 31.819822107733454 18.09271629530695 6 73.11985576655994 2.102159440133739 21.310938931871455 3.4670458614348747 7 72.52197977389298 1.9829296997361916 19.681216834268326 5.813873692102501 8 62.21444267098894 3.387170338404254 26.07205229675974 8.326334693847064 9 38.55149403641222 13.586541697964085 29.6012339391144 18.26073032650929 10 26.097214720438007 14.818893572284548 38.88313384682106 20.200757860456385 11 23.12590128393718 12.304331811605806 41.82400962054225 22.74575728391477 12 20.964360391264016 13.190431930041926 44.46172253829567 21.38348514039839 13 17.241068623391346 15.793085515360517 45.776564213431506 21.189281647816635 14 14.883877048648442 16.680726190348366 46.95480987431393 21.480586886689267 15 18.081138779403037 16.051198763073142 45.243064811214126 20.624597646309688 16 19.23795669915685 19.14150852231216 40.81564533213699 20.804889446394 17 18.18785733325926 18.908324280618444 42.24383462265468 20.659983763467615 18 19.73994471736156 24.38276201248971 38.360138239274576 17.517155030874154 19 20.71903843128394 20.714930280479326 36.258819102714504 22.307212185522225 20 18.3992403655694 25.57216503748921 37.25439210338722 18.77420249355417 21 18.805760561098705 20.244406962755413 37.168214303554066 23.781618172591816 22 19.48818042998334 21.651588663931324 34.71037303409812 24.14985787198722 23 18.269926982287803 19.52641424258537 38.63757846918163 23.566080305945196 24 22.484096087779978 17.83245560512828 36.156955636172825 23.526492670918913 25 16.843184881258104 19.56427458693244 38.378531550831596 25.21400898097786 26 16.648981388676347 19.684064529712433 37.56717176692033 26.099782314690888 27 20.3317985344172 19.981531994791986 36.663005121650286 23.02366434914053 28 20.878509376153957 20.680664568086296 33.20076766399808 25.240058391761664 29 19.874486656212667 20.715443799329904 34.46995284496446 24.94011669949297 30 22.225982840067353 18.39233120285255 31.94348678365871 27.438199173421385 31 23.557117067826034 19.375019548728968 31.09473349071908 25.97312989272591 32 21.55173258926008 19.71412872423711 33.32952084489723 25.404617841605575 33 17.099057319440934 19.228713359846466 35.44960676126929 28.222622559443305 34 19.38416952097561 20.116073933643094 34.32308645369951 26.176670091681785 35 19.456995830693767 20.155521518073762 35.438916232470916 24.94856641876155 36 21.812553481821197 19.050755736355686 34.53890442153735 24.59778636028576 37 20.72207286085553 21.04316219306161 35.93595579629734 22.298809149785512 38 19.97214860488599 17.834976515849295 37.551532783743674 24.641342095521043 39 21.07612076656227 17.23159186642161 41.14863896497008 20.543648402046045 40 17.98165617298676 17.11969144052775 41.0914049548967 23.807247431588785 41 20.41844316956906 20.666846242652596 34.118846001765576 24.795864586012772 42 19.000804357254133 16.5707397892612 37.07484723981283 27.35360861367183 43 21.405333033313838 18.178193842162045 36.87634886229898 23.540124262225135 44 20.590798769235366 19.069522516167677 36.02400093740532 24.31567777719164 45 20.789390513812958 19.721037886953958 34.72031662638656 24.769254972846525 46 21.900691989992918 18.573930141829237 34.88604316452724 24.639334703650604 47 19.689433135877554 17.943002208597893 36.76248772806656 25.605076927457993 48 20.725527442213956 16.181725918183375 34.125148278568105 28.967598361034565 49 20.26723520984014 15.987709159729105 38.21098435494796 25.534071275482788 50 20.444772681544084 14.796578844050392 38.99293351378075 25.765714960624774 51 18.397046239571484 14.424977930360308 38.56970061384176 28.60827521622645 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 445.0 1 3115.0 2 5785.0 3 84407.5 4 163030.0 5 92464.0 6 21898.0 7 19648.0 8 17398.0 9 16964.5 10 16531.0 11 16014.5 12 15498.0 13 14802.5 14 14107.0 15 13097.0 16 12087.0 17 11448.0 18 10809.0 19 10116.5 20 9424.0 21 8808.5 22 8193.0 23 7811.0 24 7429.0 25 7428.0 26 8247.0 27 9067.0 28 9105.0 29 9143.0 30 10152.5 31 11162.0 32 12610.5 33 14059.0 34 16357.5 35 18656.0 36 21543.0 37 24430.0 38 27335.0 39 30240.0 40 34036.0 41 37832.0 42 46019.0 43 54206.0 44 65386.0 45 76566.0 46 107111.0 47 137656.0 48 182210.0 49 226764.0 50 245346.5 51 263929.0 52 227984.5 53 192040.0 54 165926.5 55 139813.0 56 124105.0 57 108397.0 58 101518.5 59 94640.0 60 91410.5 61 88181.0 62 85905.0 63 83629.0 64 79618.5 65 75608.0 66 62973.5 67 50339.0 68 39792.0 69 29245.0 70 23956.5 71 18668.0 72 16597.5 73 14527.0 74 12744.0 75 8515.5 76 6070.0 77 4590.5 78 3111.0 79 2421.0 80 1731.0 81 1238.5 82 746.0 83 514.0 84 282.0 85 231.5 86 181.0 87 130.5 88 80.0 89 56.0 90 32.0 91 27.0 92 22.0 93 14.5 94 7.0 95 4.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2142083.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.903661611539395 #Duplication Level Percentage of deduplicated Percentage of total 1 74.09605637802237 22.898394530559486 2 10.59216801392005 6.5467355206951305 3 3.8858756517183735 3.6026335861567413 4 2.0033478818475614 2.4764314012324493 5 1.3074516563026908 2.0202521779912535 6 0.9159892665809368 1.6984453400531656 7 0.7145810549166562 1.5458219780612832 8 0.6166164362636515 1.5244564552324187 9 0.5197647894163296 1.4456371652743754 >10 4.933616225348943 29.228355357905045 >50 0.2377773187891765 5.093340151688029 >100 0.16457606567696345 9.110403987236431 >500 0.005937389833174845 1.2302573893894222 >1k 0.005023945243455637 3.0305009454564553 >5k 9.134445897192069E-4 1.9100535199981554 >10k+ 3.044815299064023E-4 6.638280493070095 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 130400 6.087532555928038 No Hit CCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC 10696 0.49932705688808515 TruSeq Adapter, Index 15 (95% over 21bp) CTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGCT 9357 0.43681780771333323 TruSeq Adapter, Index 14 (95% over 23bp) GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 7481 0.3492395019240617 No Hit CGCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTG 7412 0.3460183382249894 TruSeq Adapter, Index 14 (95% over 21bp) CGTTCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTC 6006 0.28038129241490645 No Hit GCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC 5315 0.2481229718923123 TruSeq Adapter, Index 15 (95% over 21bp) CGTTTCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTT 5027 0.23467811471357555 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCC 4536 0.21175650056510414 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 4095 0.19116906301016345 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCT 4040 0.1886014687572797 No Hit CGTCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCT 3059 0.1428049239922076 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTC 3021 0.14103094978112427 No Hit AGCCCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTC 2653 0.12385141005273839 No Hit GGGCCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTC 2569 0.11992999337560684 No Hit TCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC 2546 0.11885627214258271 TruSeq Adapter, Index 15 (95% over 21bp) GCCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTG 2486 0.11605526023034589 No Hit AGGCCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTC 2384 0.11129353997954326 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4516631708481884 0.0 2 0.0 0.0 0.0 1.41315719325535 0.0 3 0.0 0.0 0.0 2.3802532394869855 0.0 4 0.0 0.0 0.0 3.051048908935835 0.0 5 0.0 0.0 0.0 6.152375981696321 0.0 6 0.0 0.0 0.0 7.453399331398456 0.0 7 0.0 0.0 0.0 10.75537222413884 0.0 8 0.0 0.0 0.0 14.52245314490615 0.0 9 0.0 0.0 0.0 17.904161510081543 0.0 10 0.0 0.0 0.0 19.851471675000454 0.0 11 0.0 0.0 0.0 21.47722567239458 0.0 12 0.0 0.0 0.0 22.589974338062532 0.0 13 0.0 0.0 0.0 23.1573193008861 0.0 14 0.0 0.0 0.0 23.562345623395544 0.0 15 0.0 0.0 0.0 24.518424356105715 0.0 16 0.0 0.0 0.0 25.44962076632885 0.0 17 0.0 0.0 0.0 26.651815079060896 0.0 18 0.0 0.0 0.0 27.341797680108566 0.0 19 0.0 0.0 0.0 28.141673315179663 0.0 20 0.0 0.0 0.0 29.0153556141382 0.0 21 0.0 0.0 0.0 29.926104637402005 0.0 22 4.668353187061379E-5 0.0 0.0 30.697363267436415 0.0 23 4.668353187061379E-5 0.0 0.0 31.433235780312902 0.0 24 1.4005059561184136E-4 0.0 0.0 32.01281182848657 0.0 25 1.4005059561184136E-4 0.0 0.0 32.61110797294036 0.0 26 1.4005059561184136E-4 0.0 0.0 33.152963727362575 0.0 27 1.4005059561184136E-4 0.0 0.0 33.70261563160718 0.0 28 1.4005059561184136E-4 0.0 0.0 34.23139999710562 0.0 29 1.4005059561184136E-4 0.0 0.0 34.790481974788094 0.0 30 1.8673412748245515E-4 0.0 0.0 35.330377020871744 0.0 31 1.8673412748245515E-4 0.0 0.0 35.86130882883623 0.0 32 1.8673412748245515E-4 0.0 0.0 36.42281835017597 0.0 33 1.8673412748245515E-4 0.0 0.0 36.95295653809866 0.0 34 1.8673412748245515E-4 0.0 0.0 37.52473643644994 0.0 35 1.8673412748245515E-4 0.0 0.0 38.02588415108098 0.0 36 1.8673412748245515E-4 0.0 0.0 38.59224875973527 0.0 37 1.8673412748245515E-4 0.0 0.0 39.22420373066777 0.0 38 1.8673412748245515E-4 0.0 0.0 39.955127789165964 0.0 39 1.8673412748245515E-4 0.0 0.0 40.64356983366191 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGATAT 20 7.0346514E-4 45.000004 16 CGTTTTT 31010 0.0 44.245407 1 TACGCGG 245 0.0 44.081635 1 TCATCGG 85 0.0 42.352943 1 TATACGG 75 0.0 42.000004 1 TACGGGT 130 0.0 41.53846 3 ACGGGTA 125 0.0 41.4 4 CATGCGG 270 0.0 40.833332 1 CGGTCTA 265 0.0 40.75472 30 GTTTTTT 34160 0.0 40.409103 2 CACGACG 270 0.0 40.0 25 ATTGCGG 405 0.0 40.0 1 CGTTCAG 475 0.0 39.789474 38 ACCCGCA 1960 0.0 39.719387 31 TCGATGG 255 0.0 39.705883 1 TACTATT 295 0.0 39.66102 45 GCGCGAC 1180 0.0 39.47034 8 GCATAGG 525 0.0 39.428574 1 CAACCCG 120 0.0 39.375004 22 GCGATCG 80 0.0 39.375004 8 >>END_MODULE