SRR1043260_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043260_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2370054
Sequences flagged as poor quality	0
Sequence length	52
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	90704	3.827085796357382	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	16815	0.7094775055758223	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	12226	0.5158532252851623	No Hit
CCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT	8801	0.3713417500191979	No Hit
CTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCTT	7402	0.31231355910034114	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT	5162	0.2178009446198272	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	4497	0.18974251219592464	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	4342	0.1832025768189248	No Hit
CGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC	3709	0.1564943246018867	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCG	2838	0.119744107096294	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2679	0.1130353991934361	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2508	0.10582037371300401	No Hit
TCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT	2402	0.1013479017777654	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	22220	45.22367	1
ATTACGG	195	43.641026	1
CACTTAC	4300	42.46977	36
TACACGG	130	42.46154	1
AGGGTAC	950	42.368423	5
CGGGTAC	745	41.986576	5
ACTTACT	4330	41.856815	37
ACCCGCA	4560	41.561405	31
CCCGCAC	4575	41.374863	32
CGACGGT	580	41.241383	27
CGCACTT	4465	41.209404	34
GCACTTA	4450	41.141575	35
CCGCACT	4480	41.12277	33
GGGTACC	2610	40.977013	6
CATATGC	2080	40.913464	32
CTTACTG	4425	40.906216	38
GCGCGAC	2605	40.879078	8
AATGCGG	350	40.74286	1
CCAGTAG	2230	40.636772	25
ACGTAGG	170	40.588238	1