SRR1043259_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043259_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2341937
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	87028	3.7160692196246097	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	16220	0.6925890833100976	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	10020	0.4278509626860159	No Hit
CCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC	8692	0.37114576523621257	No Hit
CTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT	7342	0.3135011744551625	No Hit
GCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC	5412	0.23109075948669838	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4359	0.18612797867747938	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4169	0.1780150362712575	No Hit
CGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTG	3722	0.1589282717681987	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2646	0.11298339793085808	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCC	2617	0.11174510672148738	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2510	0.10717623915587823	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AACGATA	60	45.000004	43
CGTTTTT	21150	44.244682	1
CGGGTAC	615	42.439026	5
TACGGGA	345	41.73913	3
ATTACGG	130	41.53846	1
CACTTAC	4305	41.132404	36
CACGACG	570	41.05263	25
GCGCGAC	2270	40.837006	8
AGGGTAC	1080	40.833336	5
GCACTTA	4350	40.75862	35
TAGGGCG	530	40.75472	4
CGACGGT	580	40.732758	27
CGGTCTA	580	40.732758	30
CGCACTT	4345	40.701954	34
CATATGC	1955	40.6266	32
ACCCGCA	4405	40.607265	31
ACTTACT	4350	40.551723	37
TACGCGG	245	40.408165	1
ACTACGG	145	40.344826	1
CCCGCAC	4475	40.122906	32