SRR1043258_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043258_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2192245
Sequences flagged as poor quality	0
Sequence length	52
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	78863	3.597362521068585	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	18733	0.8545121553476002	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	12806	0.5841500379747702	No Hit
CCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTGCT	5270	0.24039283930400115	RNA PCR Primer, Index 34 (96% over 26bp)
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	4772	0.21767640021986595	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	4303	0.1962828059819956	No Hit
CTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTGCTT	3886	0.17726120939949688	RNA PCR Primer, Index 34 (96% over 27bp)
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3400	0.15509215438967816	No Hit
GCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTGCT	3380	0.15417984759915065	TruSeq Adapter, Index 18 (95% over 24bp)
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2782	0.12690187456237784	No Hit
CGCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTGC	2469	0.11262427329062218	RNA PCR Primer, Index 34 (96% over 25bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	18760	45.031452	1
CATGCGG	395	44.835445	1
ACGGGTA	160	44.5625	4
ACGTAGG	135	44.2963	1
ATAACGG	130	44.23077	1
ACCGGTA	215	43.860466	41
CACGACG	380	43.57895	25
CCGGTAT	220	42.863636	42
GCACTTA	4685	42.75987	35
CACTTAC	4700	42.623405	36
ACTTACT	4720	42.34534	37
ACCCGCA	4795	42.30657	31
ACGGGAT	310	42.29032	4
CGCACTT	4770	42.190777	34
CCGCACT	4780	42.150627	33
ATTACGG	175	42.057144	1
CCCGCAC	4860	41.930042	32
CTTACTG	4830	41.190475	38
TTATGAC	5200	41.178844	26
CCCAACT	1830	41.098362	13