SRR1043257_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043257_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2142707
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	75111	3.505425613487985	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	17815	0.8314249218395235	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	10551	0.4924145018427624	No Hit
CCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTGC	4929	0.23003611786399167	RNA PCR Primer, Index 34 (96% over 25bp)
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4617	0.21547509762184003	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4197	0.19587372421894358	No Hit
CTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTGCT	3670	0.17127866759197594	RNA PCR Primer, Index 34 (96% over 26bp)
GCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTGC	3388	0.1581177454500312	TruSeq Adapter, Index 18 (95% over 23bp)
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3262	0.15223733342916226	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2630	0.1227419334514705	No Hit
CGCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTG	2373	0.11074775972636482	RNA PCR Primer, Index 34 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACGTT	20	7.0346525E-4	45.000004	35
TATAACG	20	7.0346525E-4	45.000004	29
TATCGCT	20	7.0346525E-4	45.000004	20
GCGTATC	20	7.0346525E-4	45.000004	33
ATCGAAT	35	1.2125929E-7	45.0	13
CGTTTTT	18725	0.0	44.050735	1
CCGGTAT	190	0.0	43.81579	42
ACGGGTA	155	0.0	43.548386	4
ACATACG	185	0.0	42.567566	16
ACGGGAT	360	0.0	42.5	4
CACGACG	360	0.0	41.875	25
ACGTAGG	125	0.0	41.399998	1
GCACTTA	4415	0.0	41.381653	35
CACTTAC	4410	0.0	41.32653	36
CGATAAG	60	3.6379788E-12	41.249996	9
TAGTAGG	585	0.0	41.153847	1
ACCCGCA	4510	0.0	40.958984	31
CGCACTT	4475	0.0	40.877094	34
ACTTACT	4440	0.0	40.79392	37
CCGCACT	4490	0.0	40.64031	33