##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043255_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1126366 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.21312521862343 33.0 31.0 34.0 31.0 34.0 2 32.521338534721394 34.0 31.0 34.0 31.0 34.0 3 32.57562373154019 34.0 31.0 34.0 31.0 34.0 4 36.15548676007621 37.0 35.0 37.0 35.0 37.0 5 36.112789270982965 37.0 35.0 37.0 35.0 37.0 6 36.33104869997852 37.0 37.0 37.0 35.0 37.0 7 36.27129636370416 37.0 37.0 37.0 35.0 37.0 8 36.17602804061912 37.0 37.0 37.0 35.0 37.0 9 37.74407164278751 39.0 38.0 39.0 35.0 39.0 10 37.57032705177536 39.0 37.0 39.0 35.0 39.0 11 37.29277339692427 39.0 37.0 39.0 34.0 39.0 12 37.3161103939572 39.0 37.0 39.0 34.0 39.0 13 37.31883508557609 39.0 37.0 39.0 34.0 39.0 14 38.72861751863959 40.0 38.0 41.0 35.0 41.0 15 38.84979837814707 40.0 38.0 41.0 35.0 41.0 16 38.90532029553449 41.0 38.0 41.0 35.0 41.0 17 38.84124787147339 41.0 38.0 41.0 35.0 41.0 18 38.59248858719102 40.0 38.0 41.0 35.0 41.0 19 38.31712516180353 40.0 37.0 41.0 35.0 41.0 20 38.0255139093332 40.0 35.0 41.0 34.0 41.0 21 37.96564970888681 40.0 35.0 41.0 34.0 41.0 22 37.925641398976886 40.0 35.0 41.0 34.0 41.0 23 37.88625988355472 40.0 35.0 41.0 34.0 41.0 24 37.795985496721315 40.0 35.0 41.0 34.0 41.0 25 37.758622863261145 40.0 35.0 41.0 34.0 41.0 26 37.76564811082721 40.0 35.0 41.0 34.0 41.0 27 37.73728255291797 40.0 35.0 41.0 34.0 41.0 28 37.669801822853316 40.0 35.0 41.0 34.0 41.0 29 37.62404138619241 40.0 35.0 41.0 34.0 41.0 30 37.51916073461024 40.0 35.0 41.0 34.0 41.0 31 37.28170594637977 39.0 35.0 41.0 33.0 41.0 32 37.04088369144665 39.0 35.0 41.0 33.0 41.0 33 36.81357125481416 39.0 35.0 41.0 32.0 41.0 34 36.28665016522161 39.0 35.0 41.0 30.0 41.0 35 36.19862904242493 39.0 35.0 41.0 30.0 41.0 36 36.00019176715206 39.0 35.0 41.0 30.0 41.0 37 35.81812217343208 38.0 35.0 41.0 30.0 41.0 38 35.77391895707079 38.0 35.0 41.0 30.0 41.0 39 35.78062192928409 38.0 35.0 41.0 29.0 41.0 40 35.794599623923304 38.0 35.0 40.0 29.0 41.0 41 35.80856666483186 39.0 35.0 41.0 29.0 41.0 42 35.792439580029935 39.0 35.0 41.0 29.0 41.0 43 35.712697293774845 38.0 35.0 41.0 29.0 41.0 44 35.57962331959594 38.0 35.0 40.0 28.0 41.0 45 35.501051168092786 38.0 35.0 40.0 27.0 41.0 46 35.38862678738527 38.0 35.0 40.0 27.0 41.0 47 35.2558289223929 38.0 35.0 40.0 26.0 41.0 48 35.231335995582256 38.0 35.0 40.0 26.0 41.0 49 35.16225720591708 38.0 35.0 40.0 26.0 41.0 50 35.060401326034345 38.0 35.0 40.0 26.0 41.0 51 34.62134954357642 37.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 0.0 15 8.0 16 22.0 17 66.0 18 159.0 19 307.0 20 576.0 21 1022.0 22 1785.0 23 2916.0 24 5416.0 25 10473.0 26 16258.0 27 18723.0 28 18050.0 29 16957.0 30 17913.0 31 20555.0 32 25098.0 33 33725.0 34 62750.0 35 107353.0 36 113281.0 37 88939.0 38 162192.0 39 401787.0 40 34.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.257983639420935 19.439596010532988 25.111731000403065 29.190689349643012 2 33.571947306648106 19.88785172847902 26.792800919061833 19.74740004581104 3 20.808334058378893 21.00116658350838 39.368908507536624 18.8215908505761 4 22.304828093177527 24.072282011353327 36.21700228877647 17.405887606692673 5 20.21083732996202 28.726896941136363 32.31338659014921 18.748879138752415 6 71.9263543111209 1.6262919867964762 22.42201913054904 4.025334571533587 7 72.85802305822442 1.3939518770985628 18.75615918804367 6.991865876633351 8 60.84132511102075 3.1768537047460597 26.73314002730906 9.248681156924125 9 34.37186491779759 17.600939659045107 29.978443951610757 18.04875147154655 10 26.43217213587768 19.02729663359867 42.34183205103847 12.198699179485176 11 23.566762491055304 15.935406430946959 41.004877633025146 19.492953444972592 12 19.351436389237602 19.466940585919673 42.91491398000295 18.266709044839775 13 13.649914858935727 22.377095899556625 42.865374132386805 21.107615109120836 14 12.031435607964019 22.272955682256036 44.16406390107656 21.531544808703387 15 13.03359653966828 18.499670622160114 47.87404804477408 20.592684793397527 16 14.277952281940328 24.402814005394337 39.19436488672421 22.124868825941125 17 15.49833713020457 22.01753248943949 41.39169683744005 21.092433542915888 18 17.29926151890238 27.497811546158175 39.345736643329076 15.857190291610365 19 16.613338825923368 23.431548892633476 36.749777603372266 23.205334678070894 20 14.45631348957621 29.049261074996934 35.85513057034747 20.63929486507938 21 14.969379402432248 23.844647299368056 37.04444203749048 24.14153126070922 22 13.207518692858272 26.093649843834065 33.34040622675045 27.35842523655721 23 12.66115987165806 23.170354929037277 43.07214528847639 21.096339910828274 24 17.24013331368312 21.538203390372225 39.08445389864396 22.1372093973007 25 13.286089956550533 24.649536651496938 39.45120857696344 22.61316481498909 26 15.177482274855597 21.366589545494094 38.71228357390049 24.743644605749818 27 20.48295136749511 21.400503921460697 38.82716630296014 19.28937840808405 28 16.652491286136122 21.648647064985983 35.54439675913513 26.15446488974277 29 20.051120150998877 20.957930193205407 37.1751278003775 21.81582185541822 30 22.76400388506045 20.013033063853133 31.83760873463865 25.38535431644776 31 24.65468595465417 18.758822620711207 34.704705220150466 21.881786204484154 32 22.502099672752905 19.296480895197476 35.19424414444328 23.007175287606337 33 23.939199159065524 18.55711198668994 34.18036410900187 23.323324745242665 34 23.680402284870105 18.106991865876633 36.892271251085354 21.320334598167914 35 32.267486767178696 17.826976311429853 31.93464646482582 17.970890456565627 36 25.59478890520488 23.017473893920805 33.45466748818768 17.93306971268664 37 25.86761319144932 19.671847339141983 38.13795870969117 16.322580759717535 38 23.588957763284757 22.747934507966328 33.28269851895387 20.38040920979504 39 26.22966247205615 21.95511938393027 35.318537668928215 16.496680475085363 40 18.003117991842792 19.91421971188761 40.3422155853426 21.740446710927 41 21.24211845883132 22.568419146174513 32.78712248061465 23.402339914379517 42 22.355255751682847 18.484666618133005 36.37485506487234 22.78522256531181 43 25.824376801146343 20.53497708560095 34.13251110207517 19.508135011177536 44 18.971186985402614 22.34176102616734 36.29397549286821 22.393076495561832 45 22.090244201263175 19.414115838013576 36.14127201992957 22.35436794079367 46 25.38899434109339 18.470372862817236 34.58192097417713 21.558711821912237 47 20.209239270361497 17.526807449798735 38.30682034081284 23.957132939026923 48 20.753112221072016 16.020192370863466 33.57958248029504 29.64711292776948 49 22.226256829485266 15.565988319959942 39.15636658066738 23.051388269887408 50 20.38964244304249 15.684244730398467 39.68789896001832 24.23821386654072 51 18.05603152083781 15.618724286777121 37.94379446822791 28.38144972415716 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 354.0 1 1846.0 2 3338.0 3 43204.5 4 83071.0 5 46254.5 6 9438.0 7 8879.0 8 8320.0 9 8638.5 10 8957.0 11 9089.5 12 9222.0 13 8716.0 14 8210.0 15 7438.5 16 6667.0 17 6067.5 18 5468.0 19 5015.5 20 4563.0 21 4183.5 22 3804.0 23 3559.0 24 3314.0 25 3509.5 26 4206.0 27 4707.0 28 4854.0 29 5001.0 30 6540.5 31 8080.0 32 8889.5 33 9699.0 34 11389.0 35 13079.0 36 15087.5 37 17096.0 38 19740.0 39 22384.0 40 25539.5 41 28695.0 42 35926.0 43 43157.0 44 48420.5 45 53684.0 46 62712.5 47 71741.0 48 96606.0 49 121471.0 50 148960.0 51 176449.0 52 172825.5 53 169202.0 54 133210.0 55 97218.0 56 74681.5 57 52145.0 58 40646.5 59 29148.0 60 22848.5 61 16549.0 62 13460.0 63 10371.0 64 8577.5 65 6784.0 66 5294.5 67 3805.0 68 2960.5 69 2116.0 70 1913.5 71 1711.0 72 1569.0 73 1427.0 74 1214.5 75 767.5 76 533.0 77 469.0 78 405.0 79 299.0 80 193.0 81 118.0 82 43.0 83 29.0 84 15.0 85 14.0 86 13.0 87 8.5 88 4.0 89 2.5 90 1.0 91 3.0 92 5.0 93 3.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1126366.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.16294470169739 #Duplication Level Percentage of deduplicated Percentage of total 1 73.18131890827306 22.805453943357946 2 12.007446177883619 7.483747624999898 3 4.702868763656247 4.396657176634789 4 2.47981043266455 3.0911278153527064 5 1.379923610006331 2.1501241575596963 6 0.9148303579175084 1.7105284713130406 7 0.6073901340752164 1.324964561237977 8 0.45037295486754503 1.1227957990141888 9 0.3566865175087226 1.0003861998868806 >10 3.310561222559106 22.488997881396518 >50 0.407009210016104 8.498725495336917 >100 0.1859950902572726 10.607410357872944 >500 0.00975900164905416 2.037509385680784 >1k 0.00487950082452708 2.7139063291163206 >5k 8.610883807988964E-4 1.8804407487232593 >10k+ 2.8702946026629877E-4 6.6872240525162105 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 74762 6.637451769673445 No Hit CCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC 8301 0.7369718191067557 No Hit CTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGCT 7485 0.6645264505498213 Illumina Single End Adapter 1 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC 5237 0.46494656266258033 No Hit CGCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTG 4136 0.3671985837640696 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCC 2647 0.23500354236544782 No Hit TCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC 2549 0.22630299565150228 No Hit CGTTCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTC 2456 0.21804635438214576 No Hit GCCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTG 1907 0.1693055365662671 No Hit ACCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTG 1879 0.16681966607656834 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTT 1738 0.1543015325391569 No Hit AGCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTG 1659 0.14728782651464975 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCT 1594 0.14151705573499201 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTC 1423 0.12633548953004617 No Hit ACTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC 1368 0.12145252963956653 No Hit CGTCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCT 1333 0.11834519152744312 No Hit TCCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTG 1326 0.11772372390501844 No Hit ATCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTG 1140 0.10121044136630546 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6837919468449865 0.0 2 0.0 0.0 0.0 2.289397939923613 0.0 3 0.0 0.0 0.0 3.8277966486914554 0.0 4 0.0 0.0 0.0 4.7645259178632875 0.0 5 0.0 0.0 0.0 9.772667143717051 0.0 6 0.0 0.0 0.0 11.178870811086272 0.0 7 0.0 0.0 0.0 15.282776646312122 0.0 8 0.0 0.0 0.0 20.39674493015592 0.0 9 0.0 0.0 0.0 24.231821628138633 0.0 10 0.0 0.0 0.0 26.658297569351348 0.0 11 0.0 0.0 0.0 28.700351395549937 0.0 12 0.0 0.0 0.0 30.111881928254228 0.0 13 0.0 0.0 0.0 30.721364103675004 0.0 14 0.0 0.0 0.0 31.16091927490709 0.0 15 0.0 0.0 0.0 32.55371699784972 0.0 16 0.0 0.0 0.0 34.11848369002615 0.0 17 0.0 0.0 0.0 35.854509102725046 0.0 18 0.0 0.0 0.0 36.791771058430385 0.0 19 0.0 0.0 0.0 37.80298766120426 0.0 20 0.0 0.0 0.0 38.99025716330216 0.0 21 0.0 0.0 0.0 40.09735734210727 0.0 22 0.0 0.0 0.0 41.18394908937237 0.0 23 0.0 0.0 0.0 42.03633632407228 0.0 24 3.551243556712472E-4 0.0 0.0 42.748982124815555 0.0 25 3.551243556712472E-4 0.0 0.0 43.43082088770435 0.0 26 3.551243556712472E-4 0.0 0.0 44.11363624257124 0.0 27 3.551243556712472E-4 0.0 0.0 44.76493431087231 0.0 28 3.551243556712472E-4 0.0 0.0 45.42608708004325 0.0 29 3.551243556712472E-4 0.0 0.0 46.1854317335573 0.0 30 3.551243556712472E-4 0.0 0.0 46.85972410388808 0.0 31 3.551243556712472E-4 0.0 0.0 47.46458966268513 0.0 32 3.551243556712472E-4 0.0 0.0 48.063773231791444 0.0 33 3.551243556712472E-4 0.0 0.0 48.62637899226362 0.0 34 3.551243556712472E-4 0.0 0.0 49.29561084052608 0.0 35 3.551243556712472E-4 0.0 0.0 49.836731577480144 0.0 36 3.551243556712472E-4 0.0 0.0 50.391347039949714 0.0 37 3.551243556712472E-4 0.0 0.0 50.93149118492568 0.0 38 3.551243556712472E-4 0.0 0.0 51.4978257511324 0.0 39 3.551243556712472E-4 0.0 0.0 52.04684800500015 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTGGTT 25 3.890755E-5 45.000004 27 CGGCGTT 30 2.1654632E-6 45.000004 42 CCGGCGT 30 2.1654632E-6 45.000004 41 CCTACGG 25 3.890755E-5 45.000004 1 GCCATTA 25 3.890755E-5 45.000004 8 CCCCGTC 25 3.890755E-5 45.000004 11 CGCAGTA 25 3.890755E-5 45.000004 36 TCATCGG 50 2.1827873E-11 45.000004 1 GCGGAAT 25 3.890755E-5 45.000004 4 AATAGGC 30 2.1654632E-6 45.000004 2 TCGCGCA 25 3.890755E-5 45.000004 33 AGCGTAG 20 7.0332276E-4 45.0 36 ATTAGCG 20 7.0332276E-4 45.0 11 TCCGATA 20 7.0332276E-4 45.0 44 CGGCATC 45 3.8562575E-10 45.0 22 ATTACGG 175 0.0 45.0 1 TTCACGT 20 7.0332276E-4 45.0 30 TTCACGC 20 7.0332276E-4 45.0 1 TAAACGG 55 1.8189894E-12 45.0 1 TCGGCAT 45 3.8562575E-10 45.0 21 >>END_MODULE