##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043251_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 343510 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.116459491717855 33.0 31.0 34.0 30.0 34.0 2 32.39464935518617 34.0 31.0 34.0 30.0 34.0 3 32.47671974615004 34.0 31.0 34.0 31.0 34.0 4 36.0340659660563 37.0 35.0 37.0 35.0 37.0 5 35.977080725451955 37.0 35.0 37.0 35.0 37.0 6 36.26090361270414 37.0 37.0 37.0 35.0 37.0 7 36.17139821257023 37.0 37.0 37.0 35.0 37.0 8 36.07398620127507 37.0 37.0 37.0 35.0 37.0 9 37.6321009577596 39.0 37.0 39.0 35.0 39.0 10 37.46860353410381 39.0 37.0 39.0 35.0 39.0 11 37.145524147768626 39.0 35.0 39.0 34.0 39.0 12 37.030205816424555 39.0 37.0 39.0 33.0 39.0 13 37.06256877529039 39.0 37.0 39.0 33.0 39.0 14 38.47289744112253 40.0 37.0 41.0 34.0 41.0 15 38.59013129166545 40.0 37.0 41.0 35.0 41.0 16 38.62653488981398 40.0 37.0 41.0 35.0 41.0 17 38.63679077756106 40.0 37.0 41.0 35.0 41.0 18 38.410698378504264 40.0 37.0 41.0 35.0 41.0 19 38.20195045267969 40.0 37.0 41.0 35.0 41.0 20 37.94017350295479 40.0 35.0 41.0 34.0 41.0 21 37.886763121888734 40.0 35.0 41.0 34.0 41.0 22 37.85078163663358 40.0 35.0 41.0 34.0 41.0 23 37.83714593461617 40.0 35.0 41.0 34.0 41.0 24 37.743826962824954 40.0 35.0 41.0 34.0 41.0 25 37.7195161712905 39.0 35.0 41.0 34.0 41.0 26 37.7248289715001 40.0 35.0 41.0 34.0 41.0 27 37.7375331140287 40.0 35.0 41.0 34.0 41.0 28 37.70834619079503 40.0 35.0 41.0 34.0 41.0 29 37.705251666618146 40.0 35.0 41.0 34.0 41.0 30 37.590367092661054 40.0 35.0 41.0 34.0 41.0 31 37.4483857820733 40.0 35.0 41.0 33.0 41.0 32 37.257683910220955 40.0 35.0 41.0 33.0 41.0 33 37.09432330936509 40.0 35.0 41.0 33.0 41.0 34 36.83349829699281 40.0 35.0 41.0 32.0 41.0 35 36.68444295653693 40.0 35.0 41.0 32.0 41.0 36 36.620651509417485 40.0 35.0 41.0 31.0 41.0 37 36.506113359145296 39.0 35.0 41.0 31.0 41.0 38 36.449579342668336 39.0 35.0 41.0 31.0 41.0 39 36.327833250851505 39.0 35.0 41.0 30.0 41.0 40 36.28016069401182 39.0 35.0 41.0 31.0 41.0 41 36.22524235102326 39.0 35.0 41.0 30.0 41.0 42 36.08241099240197 39.0 35.0 41.0 30.0 41.0 43 35.91494570754854 39.0 35.0 41.0 30.0 41.0 44 35.79121422957119 38.0 35.0 40.0 30.0 41.0 45 35.78158132223225 38.0 35.0 41.0 29.0 41.0 46 35.686469098425086 38.0 35.0 41.0 29.0 41.0 47 35.5577333993188 38.0 35.0 40.0 29.0 41.0 48 35.63111699804955 38.0 35.0 41.0 29.0 41.0 49 35.52714913685191 38.0 35.0 40.0 28.0 41.0 50 35.4319845128235 38.0 35.0 40.0 27.0 41.0 51 34.93390003202236 38.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 4.0 16 3.0 17 14.0 18 51.0 19 122.0 20 194.0 21 344.0 22 550.0 23 896.0 24 1613.0 25 3021.0 26 4499.0 27 5259.0 28 4919.0 29 4646.0 30 5105.0 31 6189.0 32 7758.0 33 10409.0 34 19377.0 35 39695.0 36 28416.0 37 25785.0 38 44014.0 39 130542.0 40 84.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.57503420569998 19.982533259584873 25.183546330528948 27.258886204186194 2 31.118744723588833 20.739134231900092 27.7991907076941 20.342930336816977 3 22.445052545777415 23.023492765858343 35.865331431399376 18.666123256964863 4 23.934383278507177 24.816453669471052 33.035719484148935 18.21344356787284 5 19.426508689703358 31.57928444586766 28.84865069430293 20.145556170126053 6 74.67060638700474 1.744927367471107 19.47133999010218 4.113126255421967 7 73.74254024628104 1.8858257401531253 15.67465284853425 8.696981165031586 8 60.53186224564059 3.5905796046694416 25.523565543943405 10.353992605746559 9 33.57340397659457 19.966230968530756 27.638205583534685 18.82215947133999 10 26.889173532066025 19.053593781840412 42.756251637506914 11.30098104858665 11 25.031876801257607 15.335215859800297 38.68096998631772 20.951937352624377 12 16.991936188175018 23.681697767168348 42.192949259119096 17.133416785537538 13 11.259643096270851 29.694040930395037 38.96800675380629 20.078309219527814 14 9.196238828563944 22.366161101569094 50.16476958458269 18.27283048528427 15 9.190125469418648 18.95228668743268 50.14759395650782 21.709993886640856 16 9.101045093301504 23.918663212133563 38.38927542138511 28.59101627317982 17 13.11839538878053 20.990364181537654 43.404558819248344 22.486681610433465 18 15.471747547378534 29.7301388605863 38.58315623999301 16.214957352042152 19 16.277546505196355 21.743471805769847 35.169281825856594 26.8096998631772 20 10.723996390206981 32.51113504701465 35.38732496870543 21.377543594072954 21 13.32741404908154 22.48144158830893 33.90206980873919 30.28907455387034 22 9.593316060667812 29.000029111234028 31.176093854618497 30.230560973479665 23 10.295479025355885 22.589444266542458 43.33236295886583 23.782713749235832 24 15.736659777007947 22.646793397572125 38.86640854705831 22.75013827836162 25 10.246572152193531 25.948298448371226 39.47075776542167 24.334371634013564 26 13.787953771360367 24.083723909056502 34.74454892142878 27.38377339815435 27 18.447789001775785 24.214142237489447 39.75750342057 17.58056534016477 28 13.760006986696165 25.484556490349625 32.20517597740968 28.550260545544525 29 15.827777939506857 25.769555471456435 30.02328898722017 28.37937760181654 30 20.6576227766295 23.285202759744987 31.585106692672703 24.472067770952812 31 20.8861459637274 24.785886873744577 27.188145905504935 27.139821257023083 32 14.683997554656342 27.559314139326368 30.514104392885216 27.24258391313208 33 12.014206282204302 23.41183662775465 37.86498209659108 26.708974993449974 34 16.91217140694594 27.29585747139821 32.59875986143052 23.193211260225322 35 15.82166458036156 32.5545107857122 33.03950394457221 18.584320689354023 36 18.883293062792934 25.97187854793165 32.11988006171582 23.024948327559606 37 18.933073272976042 28.596838519984864 35.64728828855055 16.822799918488546 38 18.562196151494863 27.0795610025909 27.304008616925273 27.054234228988967 39 21.686122674740183 22.643882274169602 31.018019853861606 24.65197519722861 40 13.399027684783556 17.062094262175773 36.89499577887106 32.6438822741696 41 19.64542516957294 22.17548251870397 29.52112020028529 28.6579721114378 42 18.32639515589066 18.98430904486041 35.9028849232919 26.786410875957035 43 22.374021134755903 24.725044394631887 31.84798113592035 21.052953334691857 44 14.414427527582893 26.464440627638208 35.86212919565661 23.259002649122294 45 20.27422782451748 23.03688393350994 34.08110389799424 22.60778434397834 46 25.35530261127769 19.70102762656109 31.326016709848332 23.617653052312885 47 17.63907892055544 18.495822537917384 36.58437891182207 27.280719629705104 48 19.4463043288405 14.254024628103984 30.257634421123115 36.042036621932404 49 20.533608919682106 16.654828098163083 37.87546214084015 24.936100841314662 50 19.86405053710227 15.343367005327355 36.500247445489215 28.29233501208116 51 17.123518965968966 14.310500422112893 37.926406800384264 30.63957381153387 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 108.0 1 454.0 2 800.0 3 8248.0 4 15696.0 5 8673.0 6 1650.0 7 1709.5 8 1769.0 9 2033.5 10 2298.0 11 2415.5 12 2533.0 13 2402.0 14 2271.0 15 2066.0 16 1861.0 17 1731.0 18 1601.0 19 1480.0 20 1359.0 21 1272.0 22 1185.0 23 1055.5 24 926.0 25 1018.0 26 1147.0 27 1184.0 28 1249.5 29 1315.0 30 1724.0 31 2133.0 32 2252.0 33 2371.0 34 2756.5 35 3142.0 36 3658.0 37 4174.0 38 5225.0 39 6276.0 40 10057.5 41 13839.0 42 20038.5 43 26238.0 44 37009.0 45 47780.0 46 56688.0 47 65596.0 48 62203.0 49 58810.0 50 44921.0 51 31032.0 52 23307.5 53 15583.0 54 11848.5 55 8114.0 56 7072.5 57 6031.0 58 5422.0 59 4813.0 60 3887.5 61 2962.0 62 2594.5 63 2227.0 64 1876.5 65 1526.0 66 1218.0 67 910.0 68 760.5 69 611.0 70 514.5 71 418.0 72 530.0 73 642.0 74 517.0 75 234.5 76 77.0 77 70.5 78 64.0 79 51.5 80 39.0 81 27.0 82 15.0 83 18.5 84 22.0 85 14.5 86 7.0 87 3.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 343510.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.148152336531563 #Duplication Level Percentage of deduplicated Percentage of total 1 70.4280922652743 21.2327685438479 2 12.278656477604176 7.403576119495016 3 4.8621088186582915 4.397507920251111 4 2.6139465639259822 3.15222636835175 5 1.6024916130371012 2.4156080633928356 6 1.0576489918915108 1.9131697755674582 7 0.7772688259903447 1.6403253280675771 8 0.6146307088497726 1.4823984192890658 9 0.47693742981740866 1.294090406021616 >10 4.730460940407831 30.470985656545267 >50 0.3961174842999773 8.275320006251409 >100 0.14866877874230885 7.751306649257954 >500 0.007982216308311885 1.6911613622372017 >1k 0.0039911081541559425 2.4729700389455775 >5k 0.0 0.0 >10k+ 9.977770385389856E-4 4.406585342478258 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14649 4.264504672353061 No Hit CCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTGC 2555 0.7437920293441239 TruSeq Adapter, Index 15 (95% over 21bp) CTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTGCT 2427 0.7065296497918547 TruSeq Adapter, Index 14 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTGC 2235 0.6506360804634509 TruSeq Adapter, Index 15 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTGC 1004 0.2922767896131117 TruSeq Adapter, Index 15 (95% over 21bp) CGGCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCT 909 0.2646211172891619 No Hit CGCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTG 863 0.2512299496375652 No Hit ACCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTG 737 0.21454979476580013 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCC 734 0.2136764577450438 No Hit GCCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTG 717 0.20872754796075807 No Hit AGCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTG 612 0.1781607522342872 No Hit ACTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTGC 537 0.15632732671537947 TruSeq Adapter, Index 14 (95% over 21bp) TCCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTG 513 0.14934063054932897 No Hit TGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTGCTT 451 0.13129166545369858 TruSeq Adapter, Index 15 (95% over 23bp) TGCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTG 437 0.12721609269016912 No Hit GGCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTG 432 0.1257605309889086 No Hit AGAGCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTC 422 0.12284940758638759 No Hit GCAGAGAATATCAACTGTCTCTTATACACATCTGACGCCTAATGACTCGTA 418 0.12168495822537917 No Hit CGTTCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTC 410 0.11935605950336235 No Hit CGGTCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTC 395 0.1149893743995808 No Hit ATAGCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTC 370 0.10771156589327821 No Hit GTCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTG 361 0.10509155483100928 No Hit ATCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTG 344 0.10014264504672353 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.7289452999912667 0.0 2 0.0 0.0 0.0 2.621757736310442 0.0 3 0.0 0.0 0.0 4.341940554860121 0.0 4 0.0 0.0 0.0 5.656312771098367 0.0 5 0.0 0.0 0.0 11.417717097027744 0.0 6 0.0 0.0 0.0 12.679689092020611 0.0 7 0.0 0.0 0.0 18.3389129865215 0.0 8 0.0 0.0 0.0 24.514279060289365 0.0 9 0.0 0.0 0.0 30.44831300398824 0.0 10 0.0 0.0 0.0 32.96381473610666 0.0 11 0.0 0.0 0.0 35.39285610317021 0.0 12 0.0 0.0 0.0 37.251899508020145 0.0 13 0.0 0.0 0.0 37.92960903612704 0.0 14 0.0 0.0 0.0 38.41867776775057 0.0 15 0.0 0.0 0.0 40.26578556665017 0.0 16 0.0 0.0 0.0 42.27329626502868 0.0 17 0.0 0.0 0.0 45.41527175336962 0.0 18 0.0 0.0 0.0 46.38554918342989 0.0 19 0.0 0.0 0.0 47.85683095106402 0.0 20 0.0 0.0 0.0 48.936566621059065 0.0 21 0.0 0.0 0.0 49.786614654595205 0.0 22 5.822246805042066E-4 0.0 0.0 50.86780588629152 0.0 23 5.822246805042066E-4 0.0 0.0 51.5437687403569 0.0 24 0.005822246805042066 0.0 0.0 52.09600884981514 0.0 25 0.005822246805042066 0.0 0.0 52.59672207504876 0.0 26 0.005822246805042066 0.0 0.0 53.12945765771011 0.0 27 0.005822246805042066 0.0 0.0 53.66481325143373 0.0 28 0.005822246805042066 0.0 0.0 54.22374894471777 0.0 29 0.005822246805042066 0.0 0.0 54.94221420045996 0.0 30 0.005822246805042066 0.0 0.0 55.570434630723994 0.0 31 0.005822246805042066 0.0 0.0 56.0347588134261 0.0 32 0.005822246805042066 0.0 0.0 56.54100317312451 0.0 33 0.005822246805042066 0.0 0.0 56.97796279584291 0.0 34 0.005822246805042066 0.0 0.0 57.55290966784082 0.0 35 0.005822246805042066 0.0 0.0 57.943582428459145 0.0 36 0.005822246805042066 0.0 0.0 58.381415388198306 0.0 37 0.005822246805042066 0.0 0.0 58.83846176239411 0.0 38 0.005822246805042066 0.0 0.0 59.25941020639865 0.0 39 0.005822246805042066 0.0 0.0 59.68123198742395 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTCGTT 20 7.0263725E-4 45.000004 21 TATTTGA 20 7.0263725E-4 45.000004 11 GTTGAGG 95 0.0 45.000004 1 TGTCATG 20 7.0263725E-4 45.000004 22 GTGTTAT 35 1.2086093E-7 45.000004 10 TTGATAT 20 7.0263725E-4 45.000004 23 AGCAAGG 40 6.7902874E-9 45.000004 1 GTCGCTC 20 7.0263725E-4 45.000004 15 ATCTCGG 35 1.2086093E-7 45.000004 1 CTCACGG 20 7.0263725E-4 45.000004 1 CATATTA 20 7.0263725E-4 45.000004 29 CATATGG 20 7.0263725E-4 45.000004 1 CTGTAGG 75 0.0 45.000004 1 AGTCAGG 35 1.2086093E-7 45.000004 1 CTTCCGT 40 6.7902874E-9 45.000004 44 TTTACGG 40 6.7902874E-9 45.000004 1 TCACAGG 35 1.2086093E-7 45.000004 1 CTGAGGT 20 7.0263725E-4 45.000004 2 GGCGTGT 20 7.0263725E-4 45.000004 7 TGGCGTT 20 7.0263725E-4 45.000004 35 >>END_MODULE