FastQCFastQC Report
Thu 26 May 2016
SRR1043249_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1043249_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences808412
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT435405.385867602163254No Hit
CCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC54530.6745322929397386TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCT50830.6287635512585167TruSeq Adapter, Index 16 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC42380.524237641202753TruSeq Adapter, Index 13 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG22460.27782863193520135No Hit
TCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC20330.2514806806430384TruSeq Adapter, Index 13 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCC17300.2139997921851729No Hit
ACCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG16320.20187726060474112No Hit
GCCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG14260.17639520442546622No Hit
AGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG11700.1447281831541343No Hit
ACTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC11230.13891431596760068TruSeq Adapter, Index 16 (95% over 21bp)
CGTTCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTC10590.1309975606497677No Hit
TCCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG10310.12753398019821577No Hit
TGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCTT9650.1193698262767005TruSeq Adapter, Index 13 (95% over 23bp)
CGGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCT9170.11343225978832576No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGATCGG302.1646993E-645.0000041
CAGCGAT207.0320425E-445.00000420
TTTACGG406.8102963E-945.0000041
TGCCAAC207.0320425E-445.00000429
TAGACGG1150.045.0000041
GACGTTT600.045.00000427
CGTCTTT207.0320425E-445.0000041
ATACTAC207.0320425E-445.0000049
TGGCACG207.0320425E-445.00000431
TCCAGCG207.0320425E-445.00000417
CGTAGTA207.0320425E-445.00000428
CTTGCGT207.0320425E-445.00000412
AACGCCA406.8102963E-945.00000414
ACAGCCC207.0320425E-445.00000438
CTCGAGC207.0320425E-445.0000041
TAAGGTA207.0320425E-445.00000421
CCGGTTA207.0320425E-445.00000429
TGCTACG207.0320425E-445.00000410
TTACCGG302.1646993E-645.0000041
TCGACGT600.045.00000425