SRR1043249_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043249_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	808412
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	43540	5.385867602163254	No Hit
CCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	5453	0.6745322929397386	TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCT	5083	0.6287635512585167	TruSeq Adapter, Index 16 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	4238	0.524237641202753	TruSeq Adapter, Index 13 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG	2246	0.27782863193520135	No Hit
TCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	2033	0.2514806806430384	TruSeq Adapter, Index 13 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCC	1730	0.2139997921851729	No Hit
ACCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG	1632	0.20187726060474112	No Hit
GCCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG	1426	0.17639520442546622	No Hit
AGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG	1170	0.1447281831541343	No Hit
ACTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	1123	0.13891431596760068	TruSeq Adapter, Index 16 (95% over 21bp)
CGTTCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTC	1059	0.1309975606497677	No Hit
TCCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG	1031	0.12753398019821577	No Hit
TGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCTT	965	0.1193698262767005	TruSeq Adapter, Index 13 (95% over 23bp)
CGGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCT	917	0.11343225978832576	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGG	30	2.1646993E-6	45.000004	1
CAGCGAT	20	7.0320425E-4	45.000004	20
TTTACGG	40	6.8102963E-9	45.000004	1
TGCCAAC	20	7.0320425E-4	45.000004	29
TAGACGG	115	0.0	45.000004	1
GACGTTT	60	0.0	45.000004	27
CGTCTTT	20	7.0320425E-4	45.000004	1
ATACTAC	20	7.0320425E-4	45.000004	9
TGGCACG	20	7.0320425E-4	45.000004	31
TCCAGCG	20	7.0320425E-4	45.000004	17
CGTAGTA	20	7.0320425E-4	45.000004	28
CTTGCGT	20	7.0320425E-4	45.000004	12
AACGCCA	40	6.8102963E-9	45.000004	14
ACAGCCC	20	7.0320425E-4	45.000004	38
CTCGAGC	20	7.0320425E-4	45.000004	1
TAAGGTA	20	7.0320425E-4	45.000004	21
CCGGTTA	20	7.0320425E-4	45.000004	29
TGCTACG	20	7.0320425E-4	45.000004	10
TTACCGG	30	2.1646993E-6	45.000004	1
TCGACGT	60	0.0	45.000004	25